Home
last modified time | relevance | path

Searched refs:AjPSeqin (Results 1 – 25 of 26) sorted by relevance

12

/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajmart.h362 AjBool ajMartGetRegistry(AjPSeqin seqin);
363 AjBool ajMartregistryParse(AjPSeqin seqin);
366 AjBool ajMartdatasetParse(AjPSeqin seqin);
369 AjBool ajMartattributesParse(AjPSeqin seqin);
376 AjBool ajMartfiltersParse(AjPSeqin seqin);
383 AjBool ajMartAssociate(AjPSeqin seqin);
387 void ajMartFixMart(AjPSeqin seqin);
388 void ajMartFixRegistry(AjPSeqin seqin);
392 AjBool ajMartSendQuery(AjPSeqin seqin);
400 ajuint ajMartGetRegport(const AjPSeqin seqin);
[all …]
H A Dajmart.c289 void ajMartquerySeqinFree(AjPSeqin thys) in ajMartquerySeqinFree()
933 AjBool ajMartregistryParse(AjPSeqin seqin) in ajMartregistryParse()
1013 AjBool ajMartGetRegistry(AjPSeqin seqin) in ajMartGetRegistry()
1609 AjBool ajMartdatasetParse(AjPSeqin seqin) in ajMartdatasetParse()
2135 AjBool ajMartattributesParse(AjPSeqin seqin) in ajMartattributesParse()
2573 AjBool ajMartfiltersParse(AjPSeqin seqin) in ajMartfiltersParse()
2671 AjBool ajMartAssociate(AjPSeqin seqin) in ajMartAssociate()
2868 AjBool ajMartSendQuery(AjPSeqin seqin) in ajMartSendQuery()
2993 ajuint ajMartGetRegport(const AjPSeqin seqin) in ajMartGetRegport()
3349 void ajMartFixRegistry(AjPSeqin seqin) in ajMartFixRegistry()
[all …]
H A Dajseqdb.c488 static AjBool seqBlastAll(AjPSeqin seqin);
552 static AjBool seqGcgAll(AjPSeqin seqin);
3673 static AjBool seqAccessGcg(AjPSeqin seqin) in seqAccessGcg()
3772 static void seqGcgLoadBuff(AjPSeqin seqin) in seqGcgLoadBuff()
3815 static AjBool seqGcgReadRef(AjPSeqin seqin) in seqGcgReadRef()
3950 static AjBool seqGcgReadSeq(AjPSeqin seqin) in seqGcgReadSeq()
4225 static AjBool seqGcgAll(AjPSeqin seqin) in seqGcgAll()
4765 static AjBool seqBlastAll(AjPSeqin seqin) in seqBlastAll()
4931 static AjBool seqAccessMart(AjPSeqin seqin) in seqAccessMart()
5175 static AjBool seqAccessDAS(AjPSeqin seqin) in seqAccessDAS()
[all …]
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajseqread.h80 AjBool ajSeqAllRead(AjPSeq thys, AjPSeqin seqin);
85 void ajSeqinClear(AjPSeqin thys);
86 void ajSeqinClearPos(AjPSeqin thys);
87 void ajSeqinDel(AjPSeqin* pthis);
88 AjPSeqin ajSeqinNew(void);
89 AjPSeqin ajSeqinNewQueryC(const char* qrytxt);
90 AjPSeqin ajSeqinNewQueryS(const AjPStr qry);
91 void ajSeqinSetNuc(AjPSeqin seqin);
92 void ajSeqinSetProt(AjPSeqin seqin);
95 void ajSeqinTrace(const AjPSeqin thys);
[all …]
H A Dajseqread.c1454 AjPSeqin ajSeqinNew(void) in ajSeqinNew()
1456 AjPSeqin pthis; in ajSeqinNew()
1507 AjPSeqin thys = ajSeqinNew(); in ajSeqinNewQueryC()
1568 void ajSeqinDel(AjPSeqin* pthis) in ajSeqinDel()
1570 AjPSeqin thys; in ajSeqinDel()
1659 AjPSeqin thys; in ajSeqinUsa()
1921 AjPSeqin seqin = NULL; in ajSeqallFile()
2057 void ajSeqinClear(AjPSeqin thys) in ajSeqinClear()
12610 AjPSeqin conseqin = NULL; in seqReadEmbl()
19204 AjPSeqin seqin; in ajSeqGetFromUsaRange()
[all …]
H A Dajfeatread.h93 AjPFeattabin ajFeattabinNewSeqinSSF(const AjPSeqin seqin, const AjPStr fmt,
96 AjPFeattabin ajFeattabinNewSeqinSS(const AjPSeqin seqin, const AjPStr fmt,
H A Dajseqdata.h650 #define AjPSeqin AjOSeqin* macro
691 AjPSeqin Seqin;
741 AjBool (*Access)(AjPSeqin seqin);
H A Dajseqtype.h97 AjBool ajSeqTypeCheckIn(AjPSeq thys, const AjPSeqin seqin);
H A Dajseq.h478 __deprecated void ajSeqMakeUsa(AjPSeq thys, const AjPSeqin seqin);
480 const AjPSeqin seqin, AjPStr* usa);
H A Dajseqtype.c674 AjBool ajSeqTypeCheckIn(AjPSeq thys, const AjPSeqin seqin) in ajSeqTypeCheckIn()
H A Dajrefseqread.c1060 AjPSeqin conseqin = NULL; in refseqinReadEmblcon()
H A Dajjava.c401 AjPSeqin seqin; in ajJavaGetSeqFromUsa()
436 AjPSeqin seqin; in ajJavaGetSeqsetFromUsa()
H A Dajfeatread.c664 AjPFeattabin ajFeattabinNewSeqinSS(const AjPSeqin seqin, const AjPStr fmt, in ajFeattabinNewSeqinSS()
709 AjPFeattabin ajFeattabinNewSeqinSSF(const AjPSeqin seqin, const AjPStr fmt, in ajFeattabinNewSeqinSSF()
H A Dajseq.c12119 __deprecated void ajSeqMakeUsa(AjPSeq thys, const AjPSeqin seqin) in ajSeqMakeUsa()
12135 const AjPSeqin seqin, AjPStr* usa) in ajSeqMakeUsaS()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/
H A Densutility.h71 AjBool ensTraceSeqin(const AjPSeqin seqin, ajuint level);
H A Densutility.c596 AjBool ensTraceSeqin(const AjPSeqin seqin, ajuint level) in ensTraceSeqin()
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dmartregistry.c36 AjPSeqin seqin = NULL; in main()
H A Dmartfilters.c36 AjPSeqin seqin = NULL; in main()
H A Dmartdatasets.c36 AjPSeqin seqin = NULL; in main()
H A Dmartquery.c36 AjPSeqin seqin = NULL; in main()
H A Dmartattributes.c36 AjPSeqin seqin = NULL; in main()
H A Dmartseqs.c36 AjPSeqin seqin = NULL; in main()
H A Demma.c52 AjPSeqin seqin = NULL; in main()
H A Djembossctl.c4035 AjPSeqin seqin; in jembossctl_GetSeqFromUsa()
4068 AjPSeqin seqin; in jembossctl_GetSeqsetFromUsa()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/acd/
H A Dajacd.c14183 AjPSeqin seqin; in acdSetSeq()
14516 AjPSeqin seqin; in acdSetSeqall()
14816 AjPSeqin seqin; in acdSetSeqsetall()
15774 AjPSeqin seqin; in acdSetSeqset()

12