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Searched refs:AssemblyContig (Results 1 – 7 of 7) sorted by relevance

/dports/biology/wise/wise2.4.1/src/dnaindex/
H A Dassembly.h151 #define AssemblyContig Wise2_AssemblyContig macro
161 AssemblyContig ** contig;
632 int Wise2_flush_AssemblyContig(AssemblyContig * obj);
645 AssemblyContig * Wise2_AssemblyContig_alloc_std(void);
659 AssemblyContig * Wise2_AssemblyContig_alloc_len(int len);
674 AssemblyContig * Wise2_hard_link_AssemblyContig(AssemblyContig * obj);
687 AssemblyContig * Wise2_AssemblyContig_alloc(void);
702 AssemblyContig * Wise2_free_AssemblyContig(AssemblyContig * obj);
939 void Wise2_swap_Assembly(AssemblyContig ** list,int i,int j) ;
941 void Wise2_qsort_Assembly(AssemblyContig ** list,int left,int right,int (*comp)(AssemblyContig * ,A…
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H A Dassembly.c170 AssemblyContig * c = assembly->contig[i]; in dump_contigs_as_fasta_Assembly()
1503 int flush_AssemblyContig(AssemblyContig * obj) in flush_AssemblyContig()
1581 AssemblyContig * hard_link_AssemblyContig(AssemblyContig * obj) in hard_link_AssemblyContig()
1601 AssemblyContig * AssemblyContig_alloc(void) in AssemblyContig_alloc()
1607 if((out=(AssemblyContig *) ckalloc (sizeof(AssemblyContig))) == NULL) { in AssemblyContig_alloc()
1638 AssemblyContig * free_AssemblyContig(AssemblyContig * obj) in free_AssemblyContig()
1692 AssemblyContig * temp; in swap_Assembly()
1712 void qsort_Assembly(AssemblyContig ** list,int left,int right,int (*comp)(AssemblyContig * ,Assembl… in qsort_Assembly() argument
1741 void sort_Assembly(Assembly * obj,int (*comp)(AssemblyContig *, AssemblyContig *)) in sort_Assembly() argument
1769 …if( (obj->contig = (AssemblyContig ** ) ckrealloc (obj->contig,sizeof(AssemblyContig *)*len)) == N… in expand_Assembly()
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H A Dassembly.dy58 struct AssemblyContig
67 AssemblyContig ** contig !list
233 AssemblyContig * c = assembly->contig[i];
H A Dkmer_assembly_contig.dy224 AssemblyContig * ac;
242 AssemblyContig * AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac)
244 AssemblyContig * out;
H A Dkmer_assembly_contig.c201 AssemblyContig * ac; in Assembly_from_KmerAssemblyContigSet()
220 AssemblyContig * AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac) in AssemblyContig_from_KmerAssemblyContig()
222 AssemblyContig * out; in AssemblyContig_from_KmerAssemblyContig()
H A Dkmer_assembly_contig.h282 AssemblyContig * Wise2_AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac);
/dports/biology/wise/wise2.4.1/src/dnaindex/assembly/
H A Dassemblygraph.dy119 AssemblyContig * contig;
151 AssemblyContig * AssemblyContig_from_start_link(AssemblyGraph * ag,BaseLink * link,BaseNode * prev_…
155 AssemblyContig * out;