Searched refs:AssemblyContig (Results 1 – 7 of 7) sorted by relevance
/dports/biology/wise/wise2.4.1/src/dnaindex/ |
H A D | assembly.h | 151 #define AssemblyContig Wise2_AssemblyContig macro 161 AssemblyContig ** contig; 632 int Wise2_flush_AssemblyContig(AssemblyContig * obj); 645 AssemblyContig * Wise2_AssemblyContig_alloc_std(void); 659 AssemblyContig * Wise2_AssemblyContig_alloc_len(int len); 674 AssemblyContig * Wise2_hard_link_AssemblyContig(AssemblyContig * obj); 687 AssemblyContig * Wise2_AssemblyContig_alloc(void); 702 AssemblyContig * Wise2_free_AssemblyContig(AssemblyContig * obj); 939 void Wise2_swap_Assembly(AssemblyContig ** list,int i,int j) ; 941 void Wise2_qsort_Assembly(AssemblyContig ** list,int left,int right,int (*comp)(AssemblyContig * ,A… [all …]
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H A D | assembly.c | 170 AssemblyContig * c = assembly->contig[i]; in dump_contigs_as_fasta_Assembly() 1503 int flush_AssemblyContig(AssemblyContig * obj) in flush_AssemblyContig() 1581 AssemblyContig * hard_link_AssemblyContig(AssemblyContig * obj) in hard_link_AssemblyContig() 1601 AssemblyContig * AssemblyContig_alloc(void) in AssemblyContig_alloc() 1607 if((out=(AssemblyContig *) ckalloc (sizeof(AssemblyContig))) == NULL) { in AssemblyContig_alloc() 1638 AssemblyContig * free_AssemblyContig(AssemblyContig * obj) in free_AssemblyContig() 1692 AssemblyContig * temp; in swap_Assembly() 1712 void qsort_Assembly(AssemblyContig ** list,int left,int right,int (*comp)(AssemblyContig * ,Assembl… in qsort_Assembly() argument 1741 void sort_Assembly(Assembly * obj,int (*comp)(AssemblyContig *, AssemblyContig *)) in sort_Assembly() argument 1769 …if( (obj->contig = (AssemblyContig ** ) ckrealloc (obj->contig,sizeof(AssemblyContig *)*len)) == N… in expand_Assembly() [all …]
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H A D | assembly.dy | 58 struct AssemblyContig 67 AssemblyContig ** contig !list 233 AssemblyContig * c = assembly->contig[i];
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H A D | kmer_assembly_contig.dy | 224 AssemblyContig * ac; 242 AssemblyContig * AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac) 244 AssemblyContig * out;
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H A D | kmer_assembly_contig.c | 201 AssemblyContig * ac; in Assembly_from_KmerAssemblyContigSet() 220 AssemblyContig * AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac) in AssemblyContig_from_KmerAssemblyContig() 222 AssemblyContig * out; in AssemblyContig_from_KmerAssemblyContig()
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H A D | kmer_assembly_contig.h | 282 AssemblyContig * Wise2_AssemblyContig_from_KmerAssemblyContig(KmerAssemblyContig * kac);
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/dports/biology/wise/wise2.4.1/src/dnaindex/assembly/ |
H A D | assemblygraph.dy | 119 AssemblyContig * contig; 151 AssemblyContig * AssemblyContig_from_start_link(AssemblyGraph * ag,BaseLink * link,BaseNode * prev_… 155 AssemblyContig * out;
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