| /dports/biology/bedtools/bedtools2-2.30.0/src/shuffleBed/ |
| H A D | shuffleBed.cpp | 109 if (_bed->_status == BED_VALID) { in Shuffle()
132 if (status == BED_VALID) { in Shuffle()
150 if (_bed->_status == BED_VALID) { in ShuffleWithExclusions()
197 if (status == BED_VALID) { in ShuffleWithExclusions()
250 if (_bed->_status == BED_VALID) { in ShuffleWithInclusions()
280 if (_bed->_status == BED_VALID) { in ShuffleWithInclusionsAndExclusions()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/bedFile/ |
| H A D | bedFile.cpp | 240 if (_status == BED_VALID) { in GetNextBed()
280 if (_status == BED_VALID) { in GetNextMergedBed()
314 _status = BED_VALID; in GetNextMergedBed()
667 if (_status == BED_VALID) { in loadBedFileIntoMap()
680 if (_status == BED_VALID) { in loadBedFileIntoMergedMap()
698 if (_status == BED_VALID) { in loadBedCovFileIntoMap()
725 if (_status == BED_VALID) { in loadBedCovListFileIntoMap()
752 if (_status == BED_VALID) { in loadBedFileIntoMapNoBin()
774 if (_status == BED_VALID) { in loadBedFileIntoVector()
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| H A D | bedFile.h | 283 BED_VALID = 2 enumerator
566 return BED_VALID; in parseLine()
570 return BED_VALID; in parseLine()
574 return BED_VALID; in parseLine()
605 return BED_VALID; in parseLine()
617 return BED_VALID; in parseLine()
632 return BED_VALID; in parseLine()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/shiftBed/ |
| H A D | shiftBed.cpp | 42 if (_bed->_status == BED_VALID) { in ShiftBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/split/ |
| H A D | splitBed.cpp | 192 if (bed._status != BED_VALID) continue; in loadBed()
228 if (bed._status != BED_VALID) continue; in doSimpleSplit()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/clusterBed/ |
| H A D | clusterBed.cpp | 46 if (_bed->_status != BED_VALID) in ClusterBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/linksBed/ |
| H A D | linksBed.cpp | 108 if (_bed->_status == BED_VALID) { in CreateLinks()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/slopBed/ |
| H A D | slopBed.cpp | 52 if (_bed->_status == BED_VALID) { in SlopBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/reldist/ |
| H A D | reldist.cpp | 101 if (_bedA->_status != BED_VALID) in CalculateRelativeDistance()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/flankBed/ |
| H A D | flankBed.cpp | 53 if (_bed->_status == BED_VALID) { in FlankBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bed12ToBed6/ |
| H A D | bed12ToBed6.cpp | 140 if (bed->_status == BED_VALID) { in ProcessBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/nucBed/ |
| H A D | nucBed.cpp | 121 if (_bed->_status == BED_VALID) { in ProfileDNA()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/fastaFromBed/ |
| H A D | fastaFromBed.cpp | 134 if (_bed->_status == BED_VALID) { in ExtractSeq()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/windowMaker/ |
| H A D | windowMaker.cpp | 67 if (bf._status == BED_VALID) in MakeWindowsFromBED()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/multiBamCov/ |
| H A D | multiBamCov.cpp | 130 if (_bed->_status == BED_VALID) in CollectCoverage()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/annotateBed/ |
| H A D | annotateBed.cpp | 121 if (anno->_status == BED_VALID) { in AnnotateBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/windowBed/ |
| H A D | windowBed.cpp | 143 if (_bedA->_status == BED_VALID) { in WindowIntersectBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bedToIgv/ |
| H A D | bedToIgv.cpp | 229 if (bed->_status == BED_VALID) { in ProcessBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/bedFilePE/ |
| H A D | bedFilePE.cpp | 188 return BED_VALID; in parseLine()
481 if (bedStatus == BED_VALID) { in loadBedPEFileIntoMap()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bedToBam/ |
| H A D | bedToBam.cpp | 190 if (bed->_status == BED_VALID) { in ProcessBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/pairToPair/ |
| H A D | pairToPair.cpp | 58 if (bedStatus == BED_VALID) { in IntersectPairs()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bedpeToBam/ |
| H A D | bedpeToBam.cpp | 186 if (bedpeStatus == BED_VALID) { in ProcessBedPE()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/genomeCoverageBed/ |
| H A D | genomeCoverageBed.cpp | 165 if (_bed->_status == BED_VALID) { in CoverageBed()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/pairToBed/ |
| H A D | pairToBed.cpp | 357 if (bedStatus == BED_VALID) { in IntersectBedPE()
|