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Searched refs:BEGIN_ST (Results 1 – 4 of 4) sorted by relevance

/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/
H A Dmaxmodelmaker.c388 trans[BEGIN_ST][MATL_ST] = (double) nseq - gapcount[j]; in init_maxmx()
389 trans[BEGIN_ST][DEL_ST] = gapcount[j]; in init_maxmx()
394 (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) in init_maxmx()
403 trans[BEGIN_ST][DEL_ST] = gapcount[j]; in init_maxmx()
404 trans[BEGIN_ST][MATL_ST] = (double) nseq - gapcount[j]; in init_maxmx()
412 (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) in init_maxmx()
1421 fy = BEGIN_ST; in frombeginr_transtable()
1480 fy = BEGIN_ST; in frombeginl_transtable()
1540 trans[BEGIN_ST][ty] += weights[idx]; in fromroot_transtable()
1544 trans[BEGIN_ST][INSL_ST] += weights[idx]; in fromroot_transtable()
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H A Dsmallviterbi.c643 curr_tr = AttachTrace(tr, NULL, 0, N-1, 0, BEGIN_ST); in trace_mx()
685 PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2-1, j2-1, icm[end_y].tmx[1], BEGIN_ST)); in trace_mx()
686 PushTracestack(dolist, AttachTrace(curr_tr, NULL, i2-1, j2-1, icm[end_y].tmx[0], BEGIN_ST)); in trace_mx()
701 icm[end_y].tmx[1], BEGIN_ST)); in trace_mx()
703 icm[end_y].tmx[0], BEGIN_ST)); in trace_mx()
H A Dstructs.h54 #define BEGIN_ST DEL_ST macro
H A Dstructs.c45 case uBEGIN_ST: return BEGIN_ST; in StatetypeIndex()