| /dports/biology/ncbi-toolkit/ncbi/cn3d/ |
| H A D | cn3dshim.h | 234 NLM_EXTERN BiostrucFeature *Cn3D_FindFeature(BiostrucFeatureSetPtr bsfsp,
248 NLM_EXTERN BiostrucFeatureSetPtr Cn3D_AddFeatureSet(
249 BiostrucFeatureSetPtr *bsfspp);
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| H A D | cn3dshim.c | 319 NLM_EXTERN BiostrucFeature *Cn3D_FindFeature(BiostrucFeatureSetPtr bsfsp, in Cn3D_FindFeature()
347 NLM_EXTERN BiostrucFeatureSetPtr Cn3D_AddFeatureSet( in Cn3D_AddFeatureSet()
348 BiostrucFeatureSetPtr *bsfspp) in Cn3D_AddFeatureSet()
350 BiostrucFeatureSetPtr bsfsp; in Cn3D_AddFeatureSet()
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| H A D | cn3dsave.c | 206 BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL; in Cn3D_AddMatrix()
895 static BiostrucFeatureSetPtr Cn3D_MakeBSFSPFromARS(PARS pars) in Cn3D_MakeBSFSPFromARS()
897 BiostrucFeatureSetPtr bsfsp; in Cn3D_MakeBSFSPFromARS()
960 BiostrucFeatureSetPtr bsfsp, bsfspNew; in Cn3D_AddGlobalRenderSettingsToBiostruc()
984 BiostrucFeatureSetPtr bsfsp, bsfsp_prev = NULL, bsfsp_curr = NULL; in Cn3D_RemoveGlobalRenderSettingsFromBiostruc()
1048 BiostrucFeatureSetPtr bsfsp; in Cn3D_GetRenderSettingsFromBiostruc()
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| H A D | cn3dstyl.c | 2116 static BiostrucFeatureSetPtr
2122 BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = in MakeBiostrucFeatureSetForUserDefinedFeature()
2156 BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail = NULL; in Cn3DAddUserDefinedFeatureToBiostruc()
2420 BiostrucFeatureSetPtr bsfsp, bsfsp_prev = NULL, bsfsp_curr = NULL; in Cn3DRemoveUserDefinedFeatureFromBiostruc()
2453 BiostrucFeatureSetPtr bsfsp = NULL; in Cn3DIndexUserDefinedFeatureForMSD()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/ |
| H A D | objmmdb3.h | 39 } BiostrucFeatureSet, PNTR BiostrucFeatureSetPtr; typedef
42 NLM_EXTERN BiostrucFeatureSetPtr LIBCALL BiostrucFeatureSetFree PROTO ((BiostrucFeatureSetPtr ));
43 NLM_EXTERN BiostrucFeatureSetPtr LIBCALL BiostrucFeatureSetNew PROTO (( void ));
44 NLM_EXTERN BiostrucFeatureSetPtr LIBCALL BiostrucFeatureSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
45 NLM_EXTERN Boolean LIBCALL BiostrucFeatureSetAsnWrite PROTO (( BiostrucFeatureSetPtr , AsnIoPtr, As…
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| H A D | vastsrv.c | 412 VastTableRows(FILE *table, BiostrucFeatureSetPtr pbsfs, Int4 iMMDBid1, Int4 iFSID, Int2 iFull, ValN… in VastTableRows()
616 BiostrucFeatureSetPtr pbsfs = NULL; in VastTableEnd()
859 static ValNodePtr FilterHitsByPage(BiostrucFeatureSetPtr pbsfs, Int4 PageNum, Int4 HitsPerPage, Int… in FilterHitsByPage()
927 BiostrucFeatureSetPtr pbsfs = NULL, pbsfs2 = NULL; in MakeVastTable()
1069 BiostrucFeatureSetPtr pbsfs = NULL; in LocalGetFeatureSet()
1071 BiostrucFeatureSetPtr pbsfsLast = NULL; in LocalGetFeatureSet()
1119 BiostrucFeatureSetPtr pbsfs = NULL; in PruneBiostrucAnnotHits()
1200 BiostrucFeatureSetPtr pbsfs = NULL; in BiostrucAnnotSetGetByFid()
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| H A D | prunebsc.c | 217 static BiostrucFeatureSetPtr PruneFeatureSet(BiostrucFeatureSetPtr bsfsp, Int4 id) in PruneFeatureSet()
219 BiostrucFeatureSetPtr pbsfs; in PruneFeatureSet()
527 BiostrucFeatureSetPtr bsfsp, bsfspHead = NULL, bsfspTail; in PruneBiostruc()
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| H A D | bsannotvs.c | 79 BiostrucFeatureSetPtr pbsfsThis = NULL; in InstBSAnnotSetVS()
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| H A D | mmdbapi1.h | 591 BiostrucFeatureSetPtr pbsfsFeatSet; /* ASN.1 stub only for write */
1024 void LIBCALL FreeKeptFeature(BiostrucFeatureSetPtr pbsfsThis);
1081 Int2 LIBCALL BiostrucAddFeature(BiostrucFeatureSetPtr pbsfsThis, PDNMS pdnmsThis,
1108 void LIBCALL VastTableSort(BiostrucFeatureSetPtr pbsfs, Int2 iSort);
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| H A D | vastchkid.c | 174 BiostrucFeatureSetPtr pbsfsThis = NULL; in ScreenSequence()
490 BiostrucFeatureSetPtr pbsfsThis = NULL, pbsfsHead = NULL; in CheckId()
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| H A D | vast2cn3d.c | 92 BiostrucFeatureSetPtr pbsfs = NULL; in VastToCn3D()
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| H A D | mkbioseq_vs.c | 208 BiostrucFeatureSetPtr bsfsp; in MakeBioseqs()
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| H A D | objmmdb3.c | 46 BiostrucFeatureSetPtr LIBCALL
49 BiostrucFeatureSetPtr ptr = MemNew((size_t) sizeof(BiostrucFeatureSet)); in BiostrucFeatureSetNew()
62 BiostrucFeatureSetPtr LIBCALL
63 BiostrucFeatureSetFree(BiostrucFeatureSetPtr ptr) in BiostrucFeatureSetFree()
81 BiostrucFeatureSetPtr LIBCALL
88 BiostrucFeatureSetPtr ptr; in BiostrucFeatureSetAsnRead()
167 BiostrucFeatureSetAsnWrite(BiostrucFeatureSetPtr ptr, AsnIoPtr aip, AsnTypePtr orig) in BiostrucFeatureSetAsnWrite()
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| H A D | mmdbapi1.c | 686 void LIBCALL FreeKeptFeature(BiostrucFeatureSetPtr pbsfsThis) in FreeKeptFeature()
2858 BiostrucFeatureSetPtr pbsfsThis = NULL; in InstBSAnnotSet()
2966 BiostrucFeatureSetPtr pbsfs=NULL; in BiosToSeq()
3396 BiostrucFeatureSetPtr pbsfs=NULL; in BiostrToSeqAnnotSet()
3732 void LIBCALL VastTableSort(BiostrucFeatureSetPtr pbsfs, Int2 iSort) in VastTableSort()
4161 Int2 LIBCALL BiostrucAddFeature(BiostrucFeatureSetPtr pbsfsThis, PDNMS pdnmsThis, in BiostrucAddFeature()
4488 BiostrucFeatureSetPtr pbsfsThis = NULL; in Biostruc2Modelstruc()
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| H A D | mmdbapi4.c | 1160 BiostrucFeatureSetPtr pfsThis = NULL; in WriteOutBiostruc()
1193 BiostrucFeatureSetPtr pfsThis = NULL; in WriteASNChemGraphOnly()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/newvast/ |
| H A D | vastuti.c | 181 BiostrucFeatureSetPtr pbsfs = NULL; in LocalGetFeatureSet()
183 BiostrucFeatureSetPtr pbsfsLast = NULL; in LocalGetFeatureSet()
232 BiostrucFeatureSetPtr pbsfs = NULL; in BiostrucAnnotSetGetByFid()
317 BiostrucFeatureSetPtr pbsfs = NULL; in PruneBiostrucAnnotHits()
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| H A D | vastchkid.c | 177 BiostrucFeatureSetPtr pbsfsThis = NULL; in ScreenSequence()
493 BiostrucFeatureSetPtr pbsfsThis = NULL, pbsfsHead = NULL; in CheckId()
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| H A D | vastsrvDB.c | 952 static void FilterHitsByPageNew(BiostrucFeatureSetPtr pbsfs, Int4 PageNum, in FilterHitsByPageNew()
1020 BiostrucFeatureSetPtr pbsfs = NULL, pbsfsLast= NULL; in GetValidBiostrucAnnotSet()
1072 BiostrucFeatureSetPtr pbsfs = NULL, pbsfs2 = NULL; in MakeVppByVS()
1195 BiostrucFeatureSetPtr pbsfs = NULL, pbsfs2 = NULL; in MakeVppByVSNbr()
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| H A D | mkbioseq_vs.c | 211 BiostrucFeatureSetPtr bsfsp; in MakeBioseqs()
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| H A D | vast2cn3dDB.c | 173 BiostrucFeatureSetPtr pbsfs = NULL; in VastToCn3DAndAli()
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| /dports/biology/ncbi-toolkit/ncbi/cdromlib/ |
| H A D | accmmdbs.c | 215 NLM_EXTERN BiostrucFeatureSetPtr LIBCALL BiostrucFeatureSetNew(void) in BiostrucFeatureSetNew()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/newVSch/ |
| H A D | vastuti.cpp | 258 BiostrucFeatureSetPtr pbsfs = NULL; in BiostrucAnnotSetGetByFid()
345 BiostrucFeatureSetPtr pbsfs = NULL; in PruneBiostrucAnnotHits()
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| H A D | vastsrv_comb.cpp | 975 static void FilterHitsByPageNew(BiostrucFeatureSetPtr pbsfs, unsigned PageNum, in FilterHitsByPageNew()
1043 BiostrucFeatureSetPtr pbsfs = NULL, pbsfsLast= NULL; in GetValidBiostrucAnnotSet()
1095 BiostrucFeatureSetPtr pbsfs = NULL, pbsfs2 = NULL; in MakeVppByVS()
1223 BiostrucFeatureSetPtr pbsfs = NULL, pbsfs2 = NULL; in MakeVppByVSNbr()
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| H A D | vast2cn3dDB_comb.cpp | 166 BiostrucFeatureSetPtr pbsfs = NULL; in VastToCn3DAndAli()
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| H A D | mmdbuti.cpp | 384 BiostrucFeatureSetPtr bfsp = NULL; in GetDomFeaPtr()
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