/dports/biology/exonerate/exonerate-2.4.0/src/bsdp/ |
H A D | hpair.c | 164 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_confirm_edge_func() 172 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_confirm_edge_func() 198 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_update_edge_func() 211 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_update_edge_func() 232 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_confirm_start_func() 248 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_update_start_func() 265 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_confirm_end_func() 282 return C4_IMPOSSIBLY_LOW_SCORE; in HPair_update_end_func() 405 start_bound = C4_IMPOSSIBLY_LOW_SCORE; in HPair_initialise_bsdp_nodes() 414 end_bound = C4_IMPOSSIBLY_LOW_SCORE; in HPair_initialise_bsdp_nodes() [all …]
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H A D | heuristic.c | 172 heuristic_bound->matrix[i][j] = C4_IMPOSSIBLY_LOW_SCORE; in Heuristic_Bound_create() 526 heuristic_span->dummy_cell[0] = C4_IMPOSSIBLY_LOW_SCORE; in Heuristic_Span_create() 562 = C4_IMPOSSIBLY_LOW_SCORE; in Heuristic_Span_clear() 626 top_score = C4_IMPOSSIBLY_LOW_SCORE; in Heuristic_Span_integrate()
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H A D | sar.c | 931 C4_IMPOSSIBLY_LOW_SCORE, hpair->subopt); in SAR_Alignment_create() 936 C4_IMPOSSIBLY_LOW_SCORE, hpair->subopt); in SAR_Alignment_create() 1017 C4_IMPOSSIBLY_LOW_SCORE, sar_alignment->hpair->subopt); in SAR_Alignment_add_SAR_Join() 1044 C4_IMPOSSIBLY_LOW_SCORE, sar_alignment->hpair->subopt); in SAR_Alignment_add_SAR_Span() 1064 sar_alignment->hpair->user_data, C4_IMPOSSIBLY_LOW_SCORE, in SAR_Alignment_add_SAR_Span()
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H A D | bsdp.c | 364 register C4_Score score = C4_IMPOSSIBLY_LOW_SCORE; in BSDP_Node_top_partial() 415 return C4_IMPOSSIBLY_LOW_SCORE; in BSDP_Node_stored_total()
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/dports/biology/exonerate/exonerate-2.4.0/src/model/ |
H A D | edit_distance.test.c | 55 C4_IMPOSSIBLY_LOW_SCORE, NULL); in Argument_main()
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H A D | ner.test.c | 60 C4_IMPOSSIBLY_LOW_SCORE, NULL); in Argument_main()
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H A D | coding2coding.test.c | 37 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_coding2coding()
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H A D | cdna2genome.test.c | 37 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_cdna2genome()
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H A D | coding2genome.test.c | 37 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_coding2genome()
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H A D | est2genome.test.c | 66 C4_IMPOSSIBLY_LOW_SCORE, NULL); in Argument_main()
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H A D | genome2genome.test.c | 37 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_genome2genome()
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H A D | protein2dna.test.c | 36 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_alignment()
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H A D | protein2genome.test.c | 36 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_alignment()
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H A D | affine.test.c | 82 C4_IMPOSSIBLY_LOW_SCORE, NULL); in test_model()
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H A D | ungapped.test.c | 46 C4_IMPOSSIBLY_LOW_SCORE, NULL); in run_ungapped_test()
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H A D | phase.c | 102 return C4_IMPOSSIBLY_LOW_SCORE; 199 return C4_IMPOSSIBLY_LOW_SCORE; \ 340 C4_IMPOSSIBLY_LOW_SCORE); in Phase_get_calc_macro()
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H A D | intron.c | 156 return C4_IMPOSSIBLY_LOW_SCORE; \ 182 return C4_IMPOSSIBLY_LOW_SCORE; \ 188 return C4_IMPOSSIBLY_LOW_SCORE; \
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/dports/biology/exonerate/exonerate-2.4.0/src/sdp/ |
H A D | sdp.c | 402 terminal->score = C4_IMPOSSIBLY_LOW_SCORE; in SDP_Terminal_create() 511 sdp_pair->last_score = C4_IMPOSSIBLY_LOW_SCORE; in SDP_Pair_create() 609 seed->max_start->score = C4_IMPOSSIBLY_LOW_SCORE; in SDP_Pair_update_starts() 627 seed->max_end->score = C4_IMPOSSIBLY_LOW_SCORE; in SDP_Pair_update_ends() 812 best_seed->max_end->score = C4_IMPOSSIBLY_LOW_SCORE; in SDP_Pair_next_path()
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H A D | scheduler.c | 711 cell->score[i][0] = C4_IMPOSSIBLY_LOW_SCORE; in Scheduler_Cell_init()
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/dports/biology/exonerate/exonerate-2.4.0/src/c4/ |
H A D | c4.h | 29 #define C4_IMPOSSIBLY_LOW_SCORE -987654321 macro 30 #define C4_IMPOSSIBLY_HIGH_SCORE -(C4_IMPOSSIBLY_LOW_SCORE)
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H A D | optimal.c | 165 register C4_Score score = C4_IMPOSSIBLY_LOW_SCORE; in Optimal_find_checkpoints_continuation() 373 C4_Score region_score = C4_IMPOSSIBLY_LOW_SCORE; in Optimal_find_path()
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H A D | viterbi.c | 183 vr->score_matrix[i][j][k][0] = C4_IMPOSSIBLY_LOW_SCORE; in Viterbi_Row_create() 660 register C4_Score t, score = C4_IMPOSSIBLY_LOW_SCORE; in Viterbi_interpreted() 694 prev_row[0][i][k][0] = C4_IMPOSSIBLY_LOW_SCORE; in Viterbi_interpreted() 758 if(t < C4_IMPOSSIBLY_LOW_SCORE) in Viterbi_interpreted() 759 t = C4_IMPOSSIBLY_LOW_SCORE; in Viterbi_interpreted() 1167 i, C4_IMPOSSIBLY_LOW_SCORE); in Viterbi_implement_dp_cell()
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/dports/biology/exonerate/exonerate-2.4.0/src/hub/ |
H A D | gam.c | 231 gqr->tie_score = C4_IMPOSSIBLY_LOW_SCORE; in GAM_QueryResult_create()
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