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Searched refs:CArgs (Results 1 – 25 of 826) sorted by relevance

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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/
H A Dblast_args.hpp534 CNcbiIstream* GetImportStream(const CArgs& args) const;
536 CNcbiOstream* GetExportStream(const CArgs& args) const;
894 static bool HasBeenSet(const CArgs& args);
911 virtual void ExtractAlgorithmOptions(const CArgs& args,
1109 virtual void ExtractAlgorithmOptions(const CArgs& args,
1121 ParseFormattingString(const CArgs& args,
1293 CMTArgs(const CArgs& cmd_line_args);
1306 void x_ExtractAlgorithmOptions(const CArgs& args);
1366 virtual void ExtractAlgorithmOptions(const CArgs& args,
1382 static bool HasBeenSet(const CArgs& args);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/
H A Dblast_args.hpp534 CNcbiIstream* GetImportStream(const CArgs& args) const;
536 CNcbiOstream* GetExportStream(const CArgs& args) const;
894 static bool HasBeenSet(const CArgs& args);
911 virtual void ExtractAlgorithmOptions(const CArgs& args,
1109 virtual void ExtractAlgorithmOptions(const CArgs& args,
1121 ParseFormattingString(const CArgs& args,
1293 CMTArgs(const CArgs& cmd_line_args);
1306 void x_ExtractAlgorithmOptions(const CArgs& args);
1366 virtual void ExtractAlgorithmOptions(const CArgs& args,
1382 static bool HasBeenSet(const CArgs& args);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/misc/data_loaders_util/
H A Ddata_loaders_util.hpp43 class CArgs;
75 static void SetupGenbankDataLoader(const CArgs& args,
80 static void SetupObjectManager(const CArgs& args,
86 static CRef<objects::CScope> GetDefaultScope(const CArgs& args);
89 static void x_SetupGenbankDataLoader(const CArgs& args,
93 static void x_SetupVDBDataLoader(const CArgs& args,
97 static void x_SetupSRADataLoader(const CArgs& args,
100 static void x_SetupBlastDataLoader(const CArgs& args,
103 static void x_SetupLDS2DataLoader(const CArgs& args,
106 static void x_SetupASNCacheDataLoader(const CArgs& args,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/multireader/
H A Dmultireader.cpp757 const CArgs& args, in xProcessSingleFile()
863 const CArgs& args, in xProcessDefault()
891 const CArgs& args, in xProcessWiggle()
913 const CArgs& args, in xProcessWiggleRaw()
928 const CArgs& args, in xProcessUCSCRegion()
942 const CArgs& args, in xProcessBed()
970 const CArgs& args, in xProcessBedRaw()
985 const CArgs& args, in xProcessGtf()
1011 const CArgs& args, in xProcessGff3()
1048 const CArgs& args, in xProcessGff2()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sample/app/eutils/
H A Deutils_sample.cpp79 void CallEInfo(const CArgs& args);
80 void CallESearch(const CArgs& args);
81 void CallEPost(const CArgs& args);
82 void CallEGQuery(const CArgs& args);
83 void CallELink(const CArgs& args);
84 void CallESummary(const CArgs& args);
85 void CallEFetch(const CArgs& args);
86 void CallESpell(const CArgs& args);
87 void CallEHistory(const CArgs& args);
256 void CEUtilsApp::CallEInfo(const CArgs& args) in CallEInfo()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/annotwriter/
H A Dannotwriter.cpp167 const CArgs& );
172 const CArgs&,
176 const CArgs& );
178 const CArgs& );
180 const CArgs& );
198 const CArgs& );
212 const CArgs&,
436 const CArgs& args) in xInitOutputStream()
455 const CArgs& args) in xTryProcessInputId()
474 const CArgs& args) in xTryProcessInputIdList()
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/dports/devel/folly/folly-2021.12.27.00/folly/functional/
H A DPartial.h58 template <typename... CArgs>
59 auto operator()(CArgs&&... cargs) & -> decltype(invokeForward(
60 std::declval<Partial&>(), Indexes{}, std::declval<CArgs>()...)) {
61 return invokeForward(*this, Indexes{}, std::forward<CArgs>(cargs)...);
63 template <typename... CArgs>
64 auto operator()(CArgs&&... cargs) const& -> decltype(invokeForward(
65 std::declval<const Partial&>(), Indexes{}, std::declval<CArgs>()...)) {
66 return invokeForward(*this, Indexes{}, std::forward<CArgs>(cargs)...);
/dports/security/keybase/client-v5.7.1/shared/ios/Pods/Folly/folly/functional/
H A DPartial.h56 template <typename... CArgs>
57 auto operator()(CArgs&&... cargs) & -> decltype(invokeForward(
60 std::declval<CArgs>()...)) {
61 return invokeForward(*this, Indexes{}, std::forward<CArgs>(cargs)...);
63 template <typename... CArgs>
64 auto operator()(CArgs&&... cargs) const& -> decltype(invokeForward(
67 std::declval<CArgs>()...)) {
68 return invokeForward(*this, Indexes{}, std::forward<CArgs>(cargs)...);
/dports/devel/simgear/simgear-2020.3.11/simgear/nasal/cppbind/
H A DNasalMethodHolder.hxx55 template<class... CArgs>
56 Ret call(Me self, CArgs ... args) in call()
59 return ctx.callMethod<Ret, CArgs...>( in call()
66 template<class... CArgs>
67 Ret call(CArgs ... args) in call()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/corelib/
H A Dncbiargs.hpp317 friend class CArgs;
366 class NCBI_XNCBI_EXPORT CArgs class
370 CArgs(void);
373 ~CArgs(void);
377 NCBI_DEPRECATED_CTOR(CArgs(const CArgs& other));
381 NCBI_DEPRECATED CArgs& operator=(const CArgs& other);
384 CArgs& Assign(const CArgs& other);
457 CArgs* SetCommand(const string& command) in SetCommand()
1168 CArgs& args,
1178 void x_PostCheck(CArgs& args,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/corelib/
H A Dncbiargs.hpp317 friend class CArgs;
366 class NCBI_XNCBI_EXPORT CArgs class
370 CArgs(void);
373 ~CArgs(void);
377 NCBI_DEPRECATED_CTOR(CArgs(const CArgs& other));
381 NCBI_DEPRECATED CArgs& operator=(const CArgs& other);
384 CArgs& Assign(const CArgs& other);
457 CArgs* SetCommand(const string& command) in SetCommand()
1166 CArgs& args,
1176 void x_PostCheck(CArgs& args,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/test/
H A Dtest_validator.cpp97 void Setup(const CArgs& args);
98 void SetupValidatorOptions(const CArgs& args);
100 CObjectIStream* OpenFile(const CArgs& args);
105 void ProcessReleaseFile(const CArgs& args);
108 const CArgs& args);
110 const CArgs& args);
187 const CArgs& args = GetArgs(); in Run()
280 (const CArgs& args) in ProcessReleaseFile()
300 const CArgs& args) in PrintBatchErrors()
425 (const CArgs& args) in OpenFile()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/srcchk/
H A Dsrcchk.cpp63 const CArgs&);
65 const CArgs&);
67 const CArgs&);
69 const CArgs&,
72 const CArgs&);
157 const CArgs& args = GetArgs(); in Run()
189 const CArgs& args) in xTryProcessIdFile()
256 const CArgs& args) in xTryProcessSeqEntry()
307 const CArgs& args, in xGetDesiredFields()
363 const CArgs& args) in xInitOutputStream()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/feat_import/
H A Dfeat_import.cpp70 const CArgs&,
75 const CArgs&);
79 const CArgs&);
159 const CArgs& args = GetArgs(); in Run()
213 const CArgs& args, in xGetInputFormat()
251 const CArgs& args) in xGetImporterFlags()
271 const CArgs& args) in xGetOutputFormat()
/dports/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/
H A Dhelper.h316 class CArgs; variable
320 CXMLLogger ( CArgs const& args );
325 void Make ( CArgs const& args );
335 class CArgs
338 friend void CXMLLogger::Make ( CArgs const& args );
340 CArgs ( int argc, char** argv, ::OptDef const* pOptions, size_t option_count );
341 …CArgs ( int argc, char** argv, ::OptDef const* pOptions1, size_t option_count1, ::OptDef const* pO…
342 CArgs ( CArgs const& x );
343 CArgs& operator= ( CArgs const& x );
344 ~CArgs ();
H A Dhelper.cpp657 CArgs::CArgs (int argc, char** argv, ::OptDef const* pOptions, size_t option_count) in CArgs() function in KApp::CArgs
663 …CArgs::CArgs (int argc, char** argv, ::OptDef const* pOptions1, size_t option_count1, ::OptDef con… in CArgs() function in KApp::CArgs
669 CArgs::~CArgs() in ~CArgs()
699 void CArgs::Release() in Release()
711 ::Args const* CArgs::GetArgs () const in GetArgs()
716 uint32_t CArgs::GetParamCount () const in GetParamCount()
726 char const* CArgs::GetParamValue ( uint32_t iteration ) const in GetParamValue()
736 uint32_t CArgs::GetOptionCount ( char const* option_name ) const in GetOptionCount()
746 char const* CArgs::GetOptionValue ( char const* option_name, uint32_t iteration ) const in GetOptionValue()
804 CXMLLogger::CXMLLogger ( CArgs const& args ) in CXMLLogger()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/test/
H A Dtest_basic_cleanup.cpp87 void Setup(const CArgs& args);
88 void SetupCleanupOptions(const CArgs& args);
90 vector<CObjectIStream*> OpenIFiles(const CArgs& args);
91 vector<CObjectOStream*> OpenOFiles(const CArgs& args);
99 void ProcessReleaseFile(const CArgs& args);
102 const CArgs& args);
167 const CArgs& args = GetArgs(); in Run()
273 (const CArgs& args) in ProcessReleaseFile()
483 (const CArgs& args) in OpenIFiles()
515 (const CArgs& args) in OpenOFiles()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sample/app/multicmd/
H A Dmulti_command.cpp157 static int s_RunList(const CArgs& args, ostream& os) in s_RunList()
178 static int s_RunCreate(const CArgs & args, ostream& os) in s_RunCreate()
201 static int s_RunPost(const CArgs& args, ostream& os) in s_RunPost()
224 static int s_RunQuery(const CArgs& args, ostream& os) in s_RunQuery()
249 static int s_CommandlessRun(const CArgs& args, ostream& os) in s_CommandlessRun()
265 typedef int (*FRun)(const CArgs & args, ostream & os);
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/
H A Dstream_source.hpp105 static vector<string> RecreateInputArgs(const CArgs& args,
125 CInputStreamSource(const CArgs& args, const string& prefix = "input");
157 virtual void InitArgs(const CArgs& args, const string &prefix = "input");
217 CArgs m_Args;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/
H A Dstream_source.hpp105 static vector<string> RecreateInputArgs(const CArgs& args,
125 CInputStreamSource(const CArgs& args, const string& prefix = "input");
157 virtual void InitArgs(const CArgs& args, const string &prefix = "input");
217 CArgs m_Args;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/client/
H A Dprocessing.hpp150 static void Submitter(TInputQueue& input, CPSG_Queue& output, const CArgs& args);
207 struct SLatency : pair<bool, bool> { SLatency(const CArgs& args); };
210 …static int ParallelProcessing(const string& service, const CArgs& args, bool batch_resolve, bool e…
242 static TSpecified GetSpecified(const CArgs& input);
252 static CPSG_BioId GetBioId(const CArgs& input);
255 static CPSG_BlobId GetBlobId(const CArgs& input);
258 static CPSG_ChunkId GetChunkId(const CArgs& input);
261 static vector<string> GetNamedAnnots(const CArgs& input) { return input["na"].GetStringList(); } in GetNamedAnnots()
267 static ESwitch GetAutoBlobSkipping(const CArgs& input) { return eDefault; } in GetAutoBlobSkipping()
273 static void ExcludeTSEs(shared_ptr<CPSG_Request_Biodata> request, const CArgs& input);
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H A Dpsg_client_app.cpp47 using TRun = function<int(CPsgClientApp*, const string&, const CArgs&)>;
77 int RunRequest(const string& service, const CArgs& args);
90 const string& s_SetPsgDefaults(const CArgs& args, bool parallel);
288 const string& s_SetPsgDefaults(const CArgs& args, bool parallel) in s_SetPsgDefaults()
331 int CPsgClientApp::RunRequest(const string& service, const CArgs& args) in RunRequest()
373 int CPsgClientApp::RunRequest<SInteractive>(const string& service, const CArgs& args) in RunRequest()
382 int CPsgClientApp::RunRequest<SPerformance>(const string& service, const CArgs& args) in RunRequest()
400 int CPsgClientApp::RunRequest<SReport>(const string&, const CArgs& args) in RunRequest()
416 int CPsgClientApp::RunRequest<STesting>(const string& service, const CArgs&) in RunRequest() argument
425 int CPsgClientApp::RunRequest<SIo>(const string& service, const CArgs& args) in RunRequest()
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/dports/devel/kdevelop/kdevelop-21.12.3/plugins/qmljs/3rdparty/qtcreator-libs/utils/
H A Dalgorithm.h334 template<template<typename...> class C, typename... CArgs,
335 typename = decltype(&C<CArgs...>::reserve)>
336 void reserve(C<CArgs...> &c, typename C<CArgs...>::size_type s) in reserve()
440 typename... CArgs> // Arguments to SC
451 typename... CArgs> // Arguments to SC
462 typename... CArgs> // Arguments to SC
474 typename... CArgs> // Arguments to SC
476 decltype(auto) transform(C<CArgs...> &container, F function) in decltype()
485 typename... CArgs> // Arguments to SC
496 typename... CArgs> // Arguments to SC
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/data_loaders_util/
H A Ddata_loaders_util.cpp167 void CDataLoadersUtil::x_SetupGenbankDataLoader(const CArgs& args, in x_SetupGenbankDataLoader()
209 void CDataLoadersUtil::x_SetupVDBDataLoader(const CArgs& args, in x_SetupVDBDataLoader()
254 void CDataLoadersUtil::x_SetupSRADataLoader(const CArgs& args, in x_SetupSRADataLoader()
282 void CDataLoadersUtil::x_SetupBlastDataLoader(const CArgs& args, in x_SetupBlastDataLoader()
323 void CDataLoadersUtil::x_SetupLDS2DataLoader(const CArgs& args, in x_SetupLDS2DataLoader()
363 void CDataLoadersUtil::x_SetupASNCacheDataLoader(const CArgs& args, in x_SetupASNCacheDataLoader()
410 void CDataLoadersUtil::SetupGenbankDataLoader(const CArgs& args, in SetupGenbankDataLoader()
419 void CDataLoadersUtil::SetupObjectManager(const CArgs& args, in SetupObjectManager()
493 CRef<objects::CScope> CDataLoadersUtil::GetDefaultScope(const CArgs& args) in GetDefaultScope()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/test/
H A Dtest_ncbiargs.cpp133 static void s_RunTest0(const CArgs& args, ostream& os) in s_RunTest0()
217 static void s_RunTest1(const CArgs& args, ostream& os) in s_RunTest1()
251 static void s_RunTest2(const CArgs& args, ostream& os) in s_RunTest2()
286 static void s_RunTest3(const CArgs& args, ostream& os) in s_RunTest3()
322 static void s_RunTest4(const CArgs& args, ostream& /*os*/) in s_RunTest4()
418 static void s_RunTest6(const CArgs& args, ostream& os) in s_RunTest6()
457 static void s_RunTest7(const CArgs& args, ostream& os) in s_RunTest7()
498 static void s_RunTest8(const CArgs& args, ostream& os) in s_RunTest8()
540 static void s_RunTest9(const CArgs& args, ostream& os) in s_RunTest9()
574 static void s_RunTest10(const CArgs& args, ostream& os) in s_RunTest10()
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