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Searched refs:CAutoDef (Results 1 – 11 of 11) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/util/
H A Dautodef.hpp59 class NCBI_XOBJEDIT_EXPORT CAutoDef class
65 CAutoDef();
66 ~CAutoDef();
248 void CAutoDef::SetKeepExons(bool keep) in SetKeepExons()
255 void CAutoDef::SetKeepIntrons(bool keep) in SetKeepIntrons()
268 void CAutoDef::SetKeepLTRs(bool keep) in SetKeepLTRs()
275 void CAutoDef::SetKeep3UTRs(bool keep) in SetKeep3UTRs()
282 void CAutoDef::SetKeep5UTRs(bool keep) in SetKeep5UTRs()
289 void CAutoDef::SetKeepuORFs(bool keep) in SetKeepuORFs()
302 void CAutoDef::SetKeepPrecursorRNA(bool keep) in SetKeepPrecursorRNA()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/util/
H A Dautodef.hpp59 class NCBI_XOBJEDIT_EXPORT CAutoDef class
65 CAutoDef();
66 ~CAutoDef();
248 void CAutoDef::SetKeepExons(bool keep) in SetKeepExons()
255 void CAutoDef::SetKeepIntrons(bool keep) in SetKeepIntrons()
268 void CAutoDef::SetKeepLTRs(bool keep) in SetKeepLTRs()
275 void CAutoDef::SetKeep3UTRs(bool keep) in SetKeep3UTRs()
282 void CAutoDef::SetKeep5UTRs(bool keep) in SetKeep5UTRs()
289 void CAutoDef::SetKeepuORFs(bool keep) in SetKeepuORFs()
302 void CAutoDef::SetKeepPrecursorRNA(bool keep) in SetKeepPrecursorRNA()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dautodef.cpp58 CAutoDef::CAutoDef() in BEGIN_SCOPE()
64 CAutoDef::~CAutoDef() in ~CAutoDef()
91 void CAutoDef::AddSources (CSeq_entry_Handle se) in AddSources()
173 unsigned int CAutoDef::GetNumAvailableModifiers() in GetNumAvailableModifiers()
285 CAutoDefModifierCombo* CAutoDef::GetEmptyCombo() in GetEmptyCombo()
413 bool CAutoDef::IsSegment(const CBioseq_Handle& bh) in IsSegment()
470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList()
862 string CAutoDef::x_GetNonFeatureListEnding() in x_GetNonFeatureListEnding()
1088 void CAutoDef::GetAvailableModifiers(CAutoDef::TAvailableModifierSet &mod_set) in GetAvailableModifiers()
1135 CAutoDef autodef; in RegenerateDefLine()
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H A Dcreate_defline.cpp3901 CAutoDef autodef; in GenerateDefline()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dautodef.cpp58 CAutoDef::CAutoDef() in BEGIN_SCOPE()
64 CAutoDef::~CAutoDef() in ~CAutoDef()
91 void CAutoDef::AddSources (CSeq_entry_Handle se) in AddSources()
173 unsigned int CAutoDef::GetNumAvailableModifiers() in GetNumAvailableModifiers()
285 CAutoDefModifierCombo* CAutoDef::GetEmptyCombo() in GetEmptyCombo()
413 bool CAutoDef::IsSegment(const CBioseq_Handle& bh) in IsSegment()
470 bool CAutoDef::x_Is5SList(CFeat_CI feat_ci) in x_Is5SList()
862 string CAutoDef::x_GetNonFeatureListEnding() in x_GetNonFeatureListEnding()
1088 void CAutoDef::GetAvailableModifiers(CAutoDef::TAvailableModifierSet &mod_set) in GetAvailableModifiers()
1135 CAutoDef autodef; in RegenerateDefLine()
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H A Dcreate_defline.cpp3895 CAutoDef autodef; in GenerateDefline()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/
H A Dautodef_with_tax.hpp42 class NCBI_XOBJEDIT_EXPORT CAutoDefWithTaxonomy : public CAutoDef
45 CAutoDefWithTaxonomy() : CAutoDef() {}; in CAutoDefWithTaxonomy()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/
H A Dautodef_with_tax.hpp42 class NCBI_XOBJEDIT_EXPORT CAutoDefWithTaxonomy : public CAutoDef
45 CAutoDefWithTaxonomy() : CAutoDef() {}; in CAutoDefWithTaxonomy()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/unit_test/
H A Dunit_test_autodef.cpp406 CAutoDef autodef2; in CheckDeflineMatches()
2241 objects::CAutoDef autodef; in BOOST_AUTO_TEST_CASE()
2260 objects::CAutoDef autodef2; in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/
H A Dcleanup.cpp5202 CRef<CUser_object> auto_user = CAutoDef::CreateIDOptions(seh); in AutodefId()
5208 CAutoDef::RegenerateSequenceDefLines(seh); in AutodefId()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/
H A Dcleanup.cpp5202 CRef<CUser_object> auto_user = CAutoDef::CreateIDOptions(seh); in AutodefId()
5208 CAutoDef::RegenerateSequenceDefLines(seh); in AutodefId()