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Searched refs:CBGZFRange (Results 1 – 5 of 5) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/readers/bam/
H A Dbamindex.hpp210 vector<CBGZFRange> m_Chunks;
239 CBGZFRange GetLimitRange(COpenRange<TSeqPos>& ref_range,
242 void AddLevelFileRanges(vector<CBGZFRange>& ranges,
243 CBGZFRange limit_file_range,
247 CBGZFRange GetFileRange() const;
266 CBGZFRange m_UnmappedChunk;
297 CBGZFRange GetTotalFileRange(size_t ref_index) const;
531 Uint8 GetFileSize(CBGZFRange range) const;
535 void AddSortedRanges(const vector<CBGZFRange>& ranges);
H A Dbgzf.hpp271 typedef pair<CBGZFPos, CBGZFPos> CBGZFRange; typedef
273 ostream& operator<<(ostream& out, const CBGZFRange& r);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/
H A Dbamindex.cpp178 CBGZFRange s_ReadFileRange(CNcbiIstream& in) in s_ReadFileRange()
182 return CBGZFRange(beg, end); in s_ReadFileRange()
574 Uint8 s_EstimatedSize(const CBGZFRange& range) in s_EstimatedSize()
583 CBGZFRange limit; in GetLimitRange()
768 CBGZFRange SBamIndexRefIndex::GetFileRange() const in GetFileRange()
770 CBGZFRange range; in GetFileRange()
1014 CBGZFRange total_range(CBGZFPos(-1), CBGZFPos(0)); in GetTotalFileRange()
1374 m_Ranges += CBGZFRange(start, end); in AddSortedRanges()
1392 vector<CBGZFRange> ranges; in AddRanges()
1422 CBGZFRange whole; in AddWhole()
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H A Dbgzf.cpp345 ostream& operator<<(ostream& out, const CBGZFRange& r) in operator <<()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/
H A Dbamindex_test.cpp129 vector<pair<CBGZFRange, pair<size_t, Uint4>>> cc; in s_DumpIndex()