Searched refs:CBGZFRange (Results 1 – 5 of 5) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/sra/readers/bam/ |
H A D | bamindex.hpp | 210 vector<CBGZFRange> m_Chunks; 239 CBGZFRange GetLimitRange(COpenRange<TSeqPos>& ref_range, 242 void AddLevelFileRanges(vector<CBGZFRange>& ranges, 243 CBGZFRange limit_file_range, 247 CBGZFRange GetFileRange() const; 266 CBGZFRange m_UnmappedChunk; 297 CBGZFRange GetTotalFileRange(size_t ref_index) const; 531 Uint8 GetFileSize(CBGZFRange range) const; 535 void AddSortedRanges(const vector<CBGZFRange>& ranges);
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H A D | bgzf.hpp | 271 typedef pair<CBGZFPos, CBGZFPos> CBGZFRange; typedef 273 ostream& operator<<(ostream& out, const CBGZFRange& r);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/ |
H A D | bamindex.cpp | 178 CBGZFRange s_ReadFileRange(CNcbiIstream& in) in s_ReadFileRange() 182 return CBGZFRange(beg, end); in s_ReadFileRange() 574 Uint8 s_EstimatedSize(const CBGZFRange& range) in s_EstimatedSize() 583 CBGZFRange limit; in GetLimitRange() 768 CBGZFRange SBamIndexRefIndex::GetFileRange() const in GetFileRange() 770 CBGZFRange range; in GetFileRange() 1014 CBGZFRange total_range(CBGZFPos(-1), CBGZFPos(0)); in GetTotalFileRange() 1374 m_Ranges += CBGZFRange(start, end); in AddSortedRanges() 1392 vector<CBGZFRange> ranges; in AddRanges() 1422 CBGZFRange whole; in AddWhole() [all …]
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H A D | bgzf.cpp | 345 ostream& operator<<(ostream& out, const CBGZFRange& r) in operator <<()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/ |
H A D | bamindex_test.cpp | 129 vector<pair<CBGZFRange, pair<size_t, Uint4>>> cc; in s_DumpIndex()
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