Searched refs:CGapsEditor (Results 1 – 9 of 9) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | gaps_edit.cpp | 216 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, const TEvidenceSet& evidences, in CGapsEditor() function in CGapsEditor 226 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, in CGapsEditor() function in CGapsEditor 242 CGapsEditor::CreateGap(CBioseq& bioseq, TSeqPos gap_start, TSeqPos gap_length) in CreateGap() 296 void CGapsEditor::ConvertNs2Gaps(CBioseq::TInst& inst) in ConvertNs2Gaps() 315 void CGapsEditor::ConvertNs2Gaps(CBioseq& bioseq) in ConvertNs2Gaps() 361 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit) in x_SetGapParameters() 369 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit, bool length_unknown) in x_SetGapParameters() 403 void CGapsEditor::ConvertNs2Gaps(objects::CSeq_entry& entry) in ConvertNs2Gaps() 426 void CGapsEditor::ConvertBioseqToDelta(CBioseq& bioseq) in ConvertBioseqToDelta() 438 void CGapsEditor::AppendGap(CBioseq& bioseq) in AppendGap() [all …]
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | gaps_edit.cpp | 216 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, const TEvidenceSet& evidences, in CGapsEditor() function in CGapsEditor 226 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, in CGapsEditor() function in CGapsEditor 242 CGapsEditor::CreateGap(CBioseq& bioseq, TSeqPos gap_start, TSeqPos gap_length) in CreateGap() 296 void CGapsEditor::ConvertNs2Gaps(CBioseq::TInst& inst) in ConvertNs2Gaps() 315 void CGapsEditor::ConvertNs2Gaps(CBioseq& bioseq) in ConvertNs2Gaps() 361 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit) in x_SetGapParameters() 369 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit, bool length_unknown) in x_SetGapParameters() 403 void CGapsEditor::ConvertNs2Gaps(objects::CSeq_entry& entry) in ConvertNs2Gaps() 426 void CGapsEditor::ConvertBioseqToDelta(CBioseq& bioseq) in ConvertBioseqToDelta() 438 void CGapsEditor::AppendGap(CBioseq& bioseq) in AppendGap() [all …]
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/ |
H A D | gaps_edit.hpp | 45 class NCBI_XOBJEDIT_EXPORT CGapsEditor class 57 CGapsEditor(CSeq_gap::EType gap_type, 62 CGapsEditor(CSeq_gap::EType gap_type,
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/ |
H A D | gaps_edit.hpp | 45 class NCBI_XOBJEDIT_EXPORT CGapsEditor class 57 CGapsEditor(CSeq_gap::EType gap_type, 62 CGapsEditor(CSeq_gap::EType gap_type,
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/ |
H A D | table2asn_context.hpp | 126 objects::CGapsEditor::TEvidenceSet m_DefaultEvidence; 127 objects::CGapsEditor::TCountToEvidenceMap m_GapsizeToEvidence; 222 objects::CGapsEditor::TCountToEvidenceMap& gapsizeToEvidence,
|
H A D | fasta_ex.hpp | 36 objects::CGapsEditor m_gap_editor;
|
H A D | table2asn_context.cpp | 880 static CGapsEditor::TEvidenceSet s_ProcessEvidenceString( in s_ProcessEvidenceString() 886 CGapsEditor::TEvidenceSet evidenceSet; in s_ProcessEvidenceString() 911 CGapsEditor::TCountToEvidenceMap& gapsizeToEvidence, in g_LoadLinkageEvidence()
|
H A D | multireader.cpp | 270 CGapsEditor gap_edit( in xReadASN1Text()
|
H A D | feature_table_reader.cpp | 1765 CGapsEditor gap_edit(gap_type, evidences, 0, 0); in MakeGap()
|