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Searched refs:CGapsEditor (Results 1 – 9 of 9) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/
H A Dgaps_edit.cpp216 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, const TEvidenceSet& evidences, in CGapsEditor() function in CGapsEditor
226 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, in CGapsEditor() function in CGapsEditor
242 CGapsEditor::CreateGap(CBioseq& bioseq, TSeqPos gap_start, TSeqPos gap_length) in CreateGap()
296 void CGapsEditor::ConvertNs2Gaps(CBioseq::TInst& inst) in ConvertNs2Gaps()
315 void CGapsEditor::ConvertNs2Gaps(CBioseq& bioseq) in ConvertNs2Gaps()
361 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit) in x_SetGapParameters()
369 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit, bool length_unknown) in x_SetGapParameters()
403 void CGapsEditor::ConvertNs2Gaps(objects::CSeq_entry& entry) in ConvertNs2Gaps()
426 void CGapsEditor::ConvertBioseqToDelta(CBioseq& bioseq) in ConvertBioseqToDelta()
438 void CGapsEditor::AppendGap(CBioseq& bioseq) in AppendGap()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/
H A Dgaps_edit.cpp216 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, const TEvidenceSet& evidences, in CGapsEditor() function in CGapsEditor
226 CGapsEditor::CGapsEditor(CSeq_gap::EType gap_type, in CGapsEditor() function in CGapsEditor
242 CGapsEditor::CreateGap(CBioseq& bioseq, TSeqPos gap_start, TSeqPos gap_length) in CreateGap()
296 void CGapsEditor::ConvertNs2Gaps(CBioseq::TInst& inst) in ConvertNs2Gaps()
315 void CGapsEditor::ConvertNs2Gaps(CBioseq& bioseq) in ConvertNs2Gaps()
361 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit) in x_SetGapParameters()
369 void CGapsEditor::x_SetGapParameters(CDelta_seq& lit, bool length_unknown) in x_SetGapParameters()
403 void CGapsEditor::ConvertNs2Gaps(objects::CSeq_entry& entry) in ConvertNs2Gaps()
426 void CGapsEditor::ConvertBioseqToDelta(CBioseq& bioseq) in ConvertBioseqToDelta()
438 void CGapsEditor::AppendGap(CBioseq& bioseq) in AppendGap()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/edit/
H A Dgaps_edit.hpp45 class NCBI_XOBJEDIT_EXPORT CGapsEditor class
57 CGapsEditor(CSeq_gap::EType gap_type,
62 CGapsEditor(CSeq_gap::EType gap_type,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/edit/
H A Dgaps_edit.hpp45 class NCBI_XOBJEDIT_EXPORT CGapsEditor class
57 CGapsEditor(CSeq_gap::EType gap_type,
62 CGapsEditor(CSeq_gap::EType gap_type,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/
H A Dtable2asn_context.hpp126 objects::CGapsEditor::TEvidenceSet m_DefaultEvidence;
127 objects::CGapsEditor::TCountToEvidenceMap m_GapsizeToEvidence;
222 objects::CGapsEditor::TCountToEvidenceMap& gapsizeToEvidence,
H A Dfasta_ex.hpp36 objects::CGapsEditor m_gap_editor;
H A Dtable2asn_context.cpp880 static CGapsEditor::TEvidenceSet s_ProcessEvidenceString( in s_ProcessEvidenceString()
886 CGapsEditor::TEvidenceSet evidenceSet; in s_ProcessEvidenceString()
911 CGapsEditor::TCountToEvidenceMap& gapsizeToEvidence, in g_LoadLinkageEvidence()
H A Dmultireader.cpp270 CGapsEditor gap_edit( in xReadASN1Text()
H A Dfeature_table_reader.cpp1765 CGapsEditor gap_edit(gap_type, evidences, 0, 0); in MakeGap()