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Searched refs:CGene (Results 1 – 4 of 4) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dchainer.cpp84 class CGene;
356 set<CGene*> CGene::RemoveGeneFromOtherGenesSets() { in RemoveGeneFromOtherGenesSets()
376 ITERATE(CGene, it, *this) { in HarborsRange()
407 bool CGene::HarborsNested(const CGene& other_gene, bool check_in_holes) const { in HarborsNested()
418 ITERATE(CGene, it, *this) { in LargeCdsOverlap()
433 void CGene::Insert(CChain& a) in Insert()
741 ITERATE(CGene, it, gene) { in CheckCompatibility()
909 gene = CGene(); in ReplacePseudoGeneSeeds()
1088 CGene* genep; in PlaceAllYouCan()
1187 list<CGene> alts; in FindGenes()
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/dports/biology/stringtie/stringtie-2.1.1/
H A Dstringtie.cpp1456 void writeUnbundledGenes(GHash<CGene>& geneabs, const char* refseq, FILE* gout) { in writeUnbundledGenes()
1459 while (CGene* g=geneabs.NextData()) { in writeUnbundledGenes()
1475 GHash<CGene> geneabs; in writeUnbundledGuides()
1526 CGene* gloc=geneabs.Find(geneid); in writeUnbundledGuides()
1535 geneabs.Add(geneid, new CGene(t.start, t.end, t.strand, t.getGeneID(), t.getGeneName())); in writeUnbundledGuides()
H A Drlink.h287 struct CGene:public GSeg { // I don't necessarily need to make this a GSeg since I can get the star… struct
294 …CGene(int gstart=0, int gend=0, char _strand='.',char *gid=NULL, char *gname=NULL):GSeg(gstart,gen… in GSeg() argument
H A Drlink.cpp14055 void merge_exons(CGene& gene,GList<GffExon>& exons) { in merge_exons()
14082 void merge_exons(CGene& gene,GVec<GSeg>& exons) { in merge_exons()
14264 …GVec<CGene>& refgene, GHash<int>& hashgene, GVec<CGene>& predgene, BundleData* bundleData,bool che… in print_predcluster()
14914 CGene g(pred[n]->start,pred[n]->end,pred[n]->strand); in print_predcluster()
15236 GVec<CGene> predgene; in printResults()
15358 CGene g(pred[n]->start,pred[n]->end,pred[n]->strand); in printResults()
15444 GVec<CGene> refgene; in printResults()
15505 …CGene g(guides[i]->start,guides[i]->end,guides[i]->strand,guides[i]->getGeneID(),guides[i]->getGen… in printResults()