Searched refs:CGnomonAnnotator (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | annot.hpp | 88 class NCBI_XALGOGNOMON_EXPORT CGnomonAnnotator : public CGnomonAnnotator_Base { class
90 CGnomonAnnotator();
91 ~CGnomonAnnotator();
150 static void ReadArgs(CGnomonAnnotator* annot, const CArgs& args);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | annot.cpp | 59 CGnomonAnnotator::CGnomonAnnotator() in CGnomonAnnotator() function in CGnomonAnnotator
63 CGnomonAnnotator::~CGnomonAnnotator() in ~CGnomonAnnotator()
72 void CGnomonAnnotator::RemoveShortHolesAndRescore(TGeneModelList chains) in RemoveShortHolesAndRescore()
79 double CGnomonAnnotator::ExtendJustThisChain(CGeneModel& chain, in ExtendJustThisChain()
92 double CGnomonAnnotator::TryWithoutObviouslyBadAlignments(TGeneModelList& aligns, TGeneModelList& s… in TryWithoutObviouslyBadAlignments()
137 double CGnomonAnnotator::TryToEliminateOneAlignment(TGeneModelList& suspect_aligns, TGeneModelList&… in TryToEliminateOneAlignment()
165 double CGnomonAnnotator::TryToEliminateAlignmentsFromTail(TGeneModelList& suspect_aligns, TGeneMode… in TryToEliminateAlignmentsFromTail()
186 void CGnomonAnnotator::Predict(TSignedSeqPos llimit, TSignedSeqPos rlimit, TGeneModelList::const_it… in Predict()
411 void CGnomonAnnotator::Predict(TGeneModelList& models, TGeneModelList& bad_aligns) in Predict()
635 void CGnomonAnnotator::Predict(TGeneModelList& models, TGeneModelList& bad_aligns, TSignedSeqPos le… in Predict()
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