Searched refs:CMergedPairwiseAln (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
| H A D | aln_builders.cpp | 84 class CMergedPairwiseAln : public CObject class
89 CMergedPairwiseAln(const CAlnUserOptions::TMergeFlags& merge_flags) in CMergedPairwiseAln() function in CMergedPairwiseAln
293 ostream& operator<<(ostream& out, const CMergedPairwiseAln& merged) in operator <<()
297 ITERATE(CMergedPairwiseAln::TPairwiseAlnVector, aln_it, merged.GetPairwiseAlns()) { in operator <<()
304 typedef vector<CRef<CMergedPairwiseAln> > TMergedVec;
613 CRef<CMergedPairwiseAln>& merged = merged_vec[row]; in BuildAln()
616 (new CMergedPairwiseAln(row == anchored.GetAnchorRow() ? in BuildAln()
632 typedef map<TAlnSeqIdIRef, CRef<CMergedPairwiseAln>, SAlnSeqIdIRefComp> TIdMergedMap; in BuildAln()
641 CRef<CMergedPairwiseAln> merged_anchor(new CMergedPairwiseAln(flags)); in BuildAln()
666 CRef<CMergedPairwiseAln>& merged = id_merged_map[anchored_aln.GetId(row)]; in BuildAln()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/ |
| H A D | aln_builders.cpp | 84 class CMergedPairwiseAln : public CObject class
89 CMergedPairwiseAln(const CAlnUserOptions::TMergeFlags& merge_flags) in CMergedPairwiseAln() function in CMergedPairwiseAln
293 ostream& operator<<(ostream& out, const CMergedPairwiseAln& merged) in operator <<()
297 ITERATE(CMergedPairwiseAln::TPairwiseAlnVector, aln_it, merged.GetPairwiseAlns()) { in operator <<()
304 typedef vector<CRef<CMergedPairwiseAln> > TMergedVec;
613 CRef<CMergedPairwiseAln>& merged = merged_vec[row]; in BuildAln()
616 (new CMergedPairwiseAln(row == anchored.GetAnchorRow() ? in BuildAln()
632 typedef map<TAlnSeqIdIRef, CRef<CMergedPairwiseAln>, SAlnSeqIdIRefComp> TIdMergedMap; in BuildAln()
641 CRef<CMergedPairwiseAln> merged_anchor(new CMergedPairwiseAln(flags)); in BuildAln()
666 CRef<CMergedPairwiseAln>& merged = id_merged_map[anchored_aln.GetId(row)]; in BuildAln()
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