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Searched refs:CORE_DPALIGN_CREATEGAP_PENALTY (Results 1 – 1 of 1) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A Dcore-indel.c4573 int CORE_DPALIGN_CREATEGAP_PENALTY = -1; variable
4587 CORE_DPALIGN_CREATEGAP_PENALTY = global_context -> config.DP_penalty_create_gap; in core_dynamic_align()
4652 …k[i-1][j] == INDEL_MASK_BY_DELETION?CORE_DPALIGN_EXTENDGAP_PENALTY:CORE_DPALIGN_CREATEGAP_PENALTY); in core_dynamic_align()
4657 …[i][j-1] == INDEL_MASK_BY_INSERTION?CORE_DPALIGN_EXTENDGAP_PENALTY:CORE_DPALIGN_CREATEGAP_PENALTY); in core_dynamic_align()