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Searched refs:CSQ_INFRAME_DELETION (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dcsq.c197 #define CSQ_INFRAME_DELETION (1<<5) macro
219 CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_FRAMESHIFT_VARIANT| \
2072 …lice->csq |= (splice->ref_end - splice->ref_beg)%3 ? CSQ_FRAMESHIFT_VARIANT : CSQ_INFRAME_DELETION; in splice_csq_del()
2833 csq->type.type |= CSQ_INFRAME_DELETION; in hap_add_csq()
2854 …if ( ibeg!=iend && (csq->type.type & (CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_INFRAME_ALTER… in hap_add_csq()
2856 rm_csq |= CSQ_INFRAME_DELETION | CSQ_INFRAME_INSERTION | CSQ_INFRAME_ALTERING; in hap_add_csq()
3508 csq_type |= CSQ_INFRAME_DELETION; in test_cds_local()
/dports/biology/bcftools/bcftools-1.14/
H A Dcsq.c197 #define CSQ_INFRAME_DELETION (1<<5) macro
219 CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_FRAMESHIFT_VARIANT| \
2072 …lice->csq |= (splice->ref_end - splice->ref_beg)%3 ? CSQ_FRAMESHIFT_VARIANT : CSQ_INFRAME_DELETION; in splice_csq_del()
2833 csq->type.type |= CSQ_INFRAME_DELETION; in hap_add_csq()
2854 …if ( ibeg!=iend && (csq->type.type & (CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_INFRAME_ALTER… in hap_add_csq()
2856 rm_csq |= CSQ_INFRAME_DELETION | CSQ_INFRAME_INSERTION | CSQ_INFRAME_ALTERING; in hap_add_csq()
3508 csq_type |= CSQ_INFRAME_DELETION; in test_cds_local()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dcsq.c197 #define CSQ_INFRAME_DELETION (1<<5) macro
219 CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_FRAMESHIFT_VARIANT| \
2072 …lice->csq |= (splice->ref_end - splice->ref_beg)%3 ? CSQ_FRAMESHIFT_VARIANT : CSQ_INFRAME_DELETION; in splice_csq_del()
2833 csq->type.type |= CSQ_INFRAME_DELETION; in hap_add_csq()
2854 …if ( ibeg!=iend && (csq->type.type & (CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_INFRAME_ALTER… in hap_add_csq()
2856 rm_csq |= CSQ_INFRAME_DELETION | CSQ_INFRAME_INSERTION | CSQ_INFRAME_ALTERING; in hap_add_csq()
3508 csq_type |= CSQ_INFRAME_DELETION; in test_cds_local()
H A Dcsq.c.pysam.c199 #define CSQ_INFRAME_DELETION (1<<5) macro
221 CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_FRAMESHIFT_VARIANT| \
2074 …lice->csq |= (splice->ref_end - splice->ref_beg)%3 ? CSQ_FRAMESHIFT_VARIANT : CSQ_INFRAME_DELETION; in splice_csq_del()
2835 csq->type.type |= CSQ_INFRAME_DELETION; in hap_add_csq()
2856 …if ( ibeg!=iend && (csq->type.type & (CSQ_INFRAME_DELETION|CSQ_INFRAME_INSERTION|CSQ_INFRAME_ALTER… in hap_add_csq()
2858 rm_csq |= CSQ_INFRAME_DELETION | CSQ_INFRAME_INSERTION | CSQ_INFRAME_ALTERING; in hap_add_csq()
3510 csq_type |= CSQ_INFRAME_DELETION; in test_cds_local()