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Searched refs:CSQ_UPSTREAM_STOP (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dcsq.c211 #define CSQ_UPSTREAM_STOP (1<<19) // adds * in front of the csq string macro
221 CSQ_UPSTREAM_STOP|CSQ_START_RETAINED)
2639 …if ( (csq->type.type&CSQ_UPSTREAM_STOP)^(vrec->vcsq[i].type&CSQ_UPSTREAM_STOP) ) continue; // bot… in csq_push()
2711 …_INCOMPLETE_CDS && (csq->type & ~(CSQ_START_STOP|CSQ_INCOMPLETE_CDS|CSQ_UPSTREAM_STOP)) ) csq->typ… in kput_vcsq()
2722 if ( csq->type & CSQ_UPSTREAM_STOP ) in kput_vcsq()
2859 if ( has_upstream_stop ) csq->type.type |= CSQ_UPSTREAM_STOP; in hap_add_csq()
/dports/biology/bcftools/bcftools-1.14/
H A Dcsq.c211 #define CSQ_UPSTREAM_STOP (1<<19) // adds * in front of the csq string macro
221 CSQ_UPSTREAM_STOP|CSQ_START_RETAINED)
2639 …if ( (csq->type.type&CSQ_UPSTREAM_STOP)^(vrec->vcsq[i].type&CSQ_UPSTREAM_STOP) ) continue; // bot… in csq_push()
2711 …_INCOMPLETE_CDS && (csq->type & ~(CSQ_START_STOP|CSQ_INCOMPLETE_CDS|CSQ_UPSTREAM_STOP)) ) csq->typ… in kput_vcsq()
2722 if ( csq->type & CSQ_UPSTREAM_STOP ) in kput_vcsq()
2859 if ( has_upstream_stop ) csq->type.type |= CSQ_UPSTREAM_STOP; in hap_add_csq()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dcsq.c211 #define CSQ_UPSTREAM_STOP (1<<19) // adds * in front of the csq string macro
221 CSQ_UPSTREAM_STOP|CSQ_START_RETAINED)
2639 …if ( (csq->type.type&CSQ_UPSTREAM_STOP)^(vrec->vcsq[i].type&CSQ_UPSTREAM_STOP) ) continue; // bot… in csq_push()
2711 …_INCOMPLETE_CDS && (csq->type & ~(CSQ_START_STOP|CSQ_INCOMPLETE_CDS|CSQ_UPSTREAM_STOP)) ) csq->typ… in kput_vcsq()
2722 if ( csq->type & CSQ_UPSTREAM_STOP ) in kput_vcsq()
2859 if ( has_upstream_stop ) csq->type.type |= CSQ_UPSTREAM_STOP; in hap_add_csq()
H A Dcsq.c.pysam.c213 #define CSQ_UPSTREAM_STOP (1<<19) // adds * in front of the csq string macro
223 CSQ_UPSTREAM_STOP|CSQ_START_RETAINED)
2641 …if ( (csq->type.type&CSQ_UPSTREAM_STOP)^(vrec->vcsq[i].type&CSQ_UPSTREAM_STOP) ) continue; // bot… in csq_push()
2713 …_INCOMPLETE_CDS && (csq->type & ~(CSQ_START_STOP|CSQ_INCOMPLETE_CDS|CSQ_UPSTREAM_STOP)) ) csq->typ… in kput_vcsq()
2724 if ( csq->type & CSQ_UPSTREAM_STOP ) in kput_vcsq()
2861 if ( has_upstream_stop ) csq->type.type |= CSQ_UPSTREAM_STOP; in hap_add_csq()