| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
| H A D | rmblastn_args.cpp | 43 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CRMBlastnAppArgs()
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| H A D | blastp_args.cpp | 58 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastpAppArgs()
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| H A D | blastn_args.cpp | 60 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastnAppArgs()
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| H A D | blastx_args.cpp | 59 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastxAppArgs()
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| H A D | tblastn_args.cpp | 60 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CTblastnAppArgs()
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| H A D | blast_args.cpp | 82 CTaskCmdLineArgs::CTaskCmdLineArgs(const set<string>& supported_tasks, in CTaskCmdLineArgs() function in CTaskCmdLineArgs
93 CTaskCmdLineArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions()
109 CTaskCmdLineArgs::ExtractAlgorithmOptions(const CArgs& /* cmd_line_args */, in ExtractAlgorithmOptions()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
| H A D | rmblastn_args.cpp | 43 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CRMBlastnAppArgs()
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| H A D | blastn_args.cpp | 60 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastnAppArgs()
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| H A D | blastp_args.cpp | 58 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastpAppArgs()
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| H A D | blastx_args.cpp | 59 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CBlastxAppArgs()
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| H A D | tblastn_args.cpp | 60 arg.Reset(new CTaskCmdLineArgs(tasks, kDefaultTask)); in CTblastnAppArgs()
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| H A D | blast_args.cpp | 82 CTaskCmdLineArgs::CTaskCmdLineArgs(const set<string>& supported_tasks, in CTaskCmdLineArgs() function in CTaskCmdLineArgs
93 CTaskCmdLineArgs::SetArgumentDescriptions(CArgDescriptions& arg_desc) in SetArgumentDescriptions()
109 CTaskCmdLineArgs::ExtractAlgorithmOptions(const CArgs& /* cmd_line_args */, in ExtractAlgorithmOptions()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/ |
| H A D | blast_args.hpp | 197 class NCBI_BLASTINPUT_EXPORT CTaskCmdLineArgs : public IBlastCmdLineArgs class
206 CTaskCmdLineArgs(const set<string>& supported_tasks,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/ |
| H A D | blast_args.hpp | 197 class NCBI_BLASTINPUT_EXPORT CTaskCmdLineArgs : public IBlastCmdLineArgs class
206 CTaskCmdLineArgs(const set<string>& supported_tasks,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/unit_test/ |
| H A D | blastinput_unit_test.cpp | 3404 arg.Reset(new CTaskCmdLineArgs(tasks, "megablast")), in BOOST_AUTO_TEST_CASE()
3405 arg.Reset(new CTaskCmdLineArgs(tasks, "dc-megablast")), in BOOST_AUTO_TEST_CASE()
3406 arg.Reset(new CTaskCmdLineArgs(tasks, "blastn")), in BOOST_AUTO_TEST_CASE()
3407 arg.Reset(new CTaskCmdLineArgs(tasks, "blastn-short")), in BOOST_AUTO_TEST_CASE()
3410 arg.Reset(new CTaskCmdLineArgs(tasks, "blastp")); in BOOST_AUTO_TEST_CASE()
3411 arg.Reset(new CTaskCmdLineArgs(tasks, "blastp-short")); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/unit_test/ |
| H A D | blastinput_unit_test.cpp | 3404 arg.Reset(new CTaskCmdLineArgs(tasks, "megablast")), in BOOST_AUTO_TEST_CASE()
3405 arg.Reset(new CTaskCmdLineArgs(tasks, "dc-megablast")), in BOOST_AUTO_TEST_CASE()
3406 arg.Reset(new CTaskCmdLineArgs(tasks, "blastn")), in BOOST_AUTO_TEST_CASE()
3407 arg.Reset(new CTaskCmdLineArgs(tasks, "blastn-short")), in BOOST_AUTO_TEST_CASE()
3410 arg.Reset(new CTaskCmdLineArgs(tasks, "blastp")); in BOOST_AUTO_TEST_CASE()
3411 arg.Reset(new CTaskCmdLineArgs(tasks, "blastp-short")); in BOOST_AUTO_TEST_CASE()
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