Searched refs:ClosedGap (Results 1 – 1 of 1) sorted by relevance
| /dports/biology/abyss/abyss-2.3.1/Sealer/ |
| H A D | sealer.cc | 342 struct ClosedGap : Gap struct
347 ClosedGap() { } in ClosedGap() argument
349 ClosedGap(Gap gap, std::string seq) : Gap(gap), seq(seq) { } in ClosedGap() argument
534 map<string, map<int, ClosedGap> > &allmerged, in insertIntoScaffold()
537 map<string, map<int, ClosedGap> >::iterator scaf_it; in insertIntoScaffold()
538 map<int, ClosedGap>::reverse_iterator pos_it; in insertIntoScaffold()
548 const ClosedGap& closedGap = pos_it->second; in insertIntoScaffold()
590 map<string, map<int, ClosedGap> > &allmerged, in kRun()
639 = ClosedGap(read2_it->second, tempSeq); in kRun()
1026 map<string, map<int, ClosedGap> > allmerged; in main()
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