Searched refs:ConfirmedStop (Results 1 – 5 of 5) sorted by relevance
245 … bool ConfirmedStop() const { return m_confirmed_stop; } // stop is confirmed by protein alignment in ConfirmedStop() function in CCDSInfo295 _ASSERT( !ConfirmedStop() ); in Invariant()330 if (ConfirmedStop()) { in Invariant()531 …bool ConfirmedStop() const { return m_cds_info.ConfirmedStop(); } // stop is confirmed by protein… in ConfirmedStop() function in CGeneModel
314 new_cds.SetStop(stop, ConfirmedStop()); in MapFromEditedToOrig()352 new_cds.SetStop(amap.MapRangeOrigToEdited(Stop(), false), ConfirmedStop()); in MapFromOrigToEdited()1786 if (cds_info.ConfirmedStop()) in CollectAttributes()
694 cds_info.SetStop(stop, gene.ConfirmedStop()); in GetGenes()
1384 …if(cds_info.ConfirmedStart() && cds_info.ConfirmedStop() && model.Continuous()) { // looks like a… in SelectBestReadingFrame()1530 bool confirmed_stop = cds_info.ConfirmedStop(); in GetScore()
4806 bool confirmed_stop = cds.ConfirmedStop(); in RestoreReasonableConfirmedStart()5819 if(ConfirmedStart() && ConfirmedStop()) in SetConfirmedStartStopForCompleteProteins()5834 if(!ConfirmedStop() && HasStop()) in SetConfirmedStartStopForCompleteProteins()5867 … if(!ConfirmedStop() && HasStop() && threep_exon.IntersectingWith((*i)->m_align->Limits()) && in SetConfirmedStartStopForCompleteProteins()5886 if((setconfstart || ConfirmedStart()) && (setconfstop || ConfirmedStop()) && Continuous()) { in SetConfirmedStartStopForCompleteProteins()5922 …edmRNA().empty() && (*i)->m_align->ConfirmedStart() && (*i)->m_align->ConfirmedStop()) // trusted… in CollectTrustedmRNAsProts()5941 if(ConfirmedStart() && ConfirmedStop()) { in CollectTrustedmRNAsProts()6972 if(cds.ConfirmedStart() || cds.ConfirmedStop()) in SetConfirmedStartStopForProteinAlignments()