Searched refs:CutExons (Results 1 – 4 of 4) sorted by relevance
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 421 …virtual void CutExons(TSignedSeqRange hole); // clip or remove exons, dangerous, should be complet… 747 …virtual void CutExons(TSignedSeqRange hole) { // clip or remove exons, dangerous, should be comple… in CutExons() function in CAlignModel 748 CGeneModel::CutExons(hole); in CutExons()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | aligncollapser.cpp | 449 align.CutExons(TSignedSeqRange(segl.GetTo()+1,segr.GetFrom()-1)); in ClipNotSupportedFlanks() 477 align.CutExons(seg); in ClipNotSupportedFlanks() 534 align.CutExons(TSignedSeqRange(segl.GetTo()+1,segr.GetFrom()-1)); in RemoveNotSupportedIntronsFromProt() 618 editedmodel.CutExons(TSignedSeqRange(segl.GetTo()+1,segr.GetFrom()-1)); in RemoveNotSupportedIntronsFromTranscript() 1723 …align.CutExons(TSignedSeqRange(align.Limits().GetFrom(),seg.GetFrom()-1)); // Clip() is not frie… in FilterAlignments() 1725 … align.CutExons(TSignedSeqRange(align.Exons()[ie-1].GetTo()+1,seg.GetFrom()-1)); in FilterAlignments() 1795 …align.CutExons(TSignedSeqRange(seg.GetTo()+1, align.Limits().GetTo())); // Clip() is not friendl… in FilterAlignments() 1797 … align.CutExons(TSignedSeqRange(seg.GetTo()+1,align.Exons()[ie+1].GetFrom()-1)); in FilterAlignments()
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H A D | chainer.cpp | 3858 unma.CutExons(hole); in CreateChainsForPartialProteins() 4880 CutExons(clip_range); in ClipChain() 4885 CutExons(clip_range); in ClipChain() 7472 model.CutExons(model.Limits()); // empty model with all atributes in MapOneModelToOrigContig() 8277 a.CutExons(a.Limits()); in transform_align() 8317 a.CutExons(a.Limits()); in transform_align() 8323 a.CutExons(a.Limits()); in transform_align() 8334 a.CutExons(*e); in transform_align() 8344 a.CutExons(TSignedSeqRange(left,e->GetTo())); in transform_align() 8352 a.CutExons(*e); in transform_align() [all …]
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H A D | gnomon_model.cpp | 751 void CGeneModel::CutExons(TSignedSeqRange hole) in CutExons() function in CGeneModel 1202 CutExons(TSignedSeqRange(Limits().GetFrom(),left_edge-1)); in TrimEdgesToFrameInOtherAlignGaps() 1218 CutExons(TSignedSeqRange(right_edge+1, Limits().GetTo())); in TrimEdgesToFrameInOtherAlignGaps()
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