Searched refs:DCurr (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | glbalignss.cpp | 28 SCORE *DCurr; member
60 delete[] DPM.DCurr; in AllocDPMem()
75 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
129 SCORE *DCurr = DPM.DCurr; in GlobalAlignSS() local
213 SCORE *ptrDCurr = DCurr; in GlobalAlignSS()
215 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSS()
270 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSS()
277 Rotate(DPrev, DCurr, DWork); in GlobalAlignSS()
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| H A D | glbalignspn.cpp | 16 SCORE *DCurr; member
46 delete[] DPM.DCurr; in FreeDPMemSPN()
87 delete[] DPM.DCurr; in AllocDPMem()
115 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
156 SCORE *DCurr = DPM.DCurr; in GlobalAlignSPN() local
299 SCORE *ptrDCurr = DCurr; in GlobalAlignSPN()
301 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSPN()
361 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSPN()
368 Rotate(DPrev, DCurr, DWork); in GlobalAlignSPN()
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| H A D | glbalignsp.cpp | 16 SCORE *DCurr; member
55 delete[] DPM.DCurr; in AllocDPMem()
83 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
121 SCORE *DCurr = DPM.DCurr; in GlobalAlignSP() local
264 SCORE *ptrDCurr = DCurr; in GlobalAlignSP()
266 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSP()
326 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSP()
333 Rotate(DPrev, DCurr, DWork); in GlobalAlignSP()
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| H A D | glbalignle.cpp | 18 SCORE *DCurr; member
61 delete[] DPM.DCurr; in AllocDPMem()
97 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
138 SCORE *DCurr = DPM.DCurr; in GlobalAlignLE() local
325 SCORE *ptrDCurr = DCurr; in GlobalAlignLE()
327 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignLE()
387 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignLE()
394 Rotate(DPrev, DCurr, DWork); in GlobalAlignLE()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | glbalignss.cpp | 70 delete[] DPM.DCurr; in AllocDPMem()
85 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
149 SCORE *DCurr = DPM.DCurr; in GlobalAlignSS() local
232 SCORE *ptrDCurr = DCurr; in GlobalAlignSS()
234 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSS()
289 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSS()
296 Rotate(DPrev, DCurr, DWork); in GlobalAlignSS()
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| H A D | glbalignspn.cpp | 56 delete[] DPM.DCurr; in FreeDPMemSPN()
100 delete[] DPM.DCurr; in AllocDPMem()
128 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
174 SCORE *DCurr = DPM.DCurr; in GlobalAlignSPN() local
317 SCORE *ptrDCurr = DCurr; in GlobalAlignSPN()
319 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSPN()
379 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSPN()
386 Rotate(DPrev, DCurr, DWork); in GlobalAlignSPN()
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| H A D | glbalignsp.cpp | 64 delete[] DPM.DCurr; in AllocDPMem()
92 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
134 SCORE *DCurr = DPM.DCurr; in GlobalAlignSP() local
277 SCORE *ptrDCurr = DCurr; in GlobalAlignSP()
279 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignSP()
339 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignSP()
346 Rotate(DPrev, DCurr, DWork); in GlobalAlignSP()
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| H A D | glbalignle.cpp | 70 delete[] DPM.DCurr; in AllocDPMem()
106 DPM.DCurr = new SCORE[uLength]; in AllocDPMem()
151 SCORE *DCurr = DPM.DCurr; in GlobalAlignLE() local
338 SCORE *ptrDCurr = DCurr; in GlobalAlignLE()
340 assert(ptrDCurr == &(DCurr[0])); in GlobalAlignLE()
400 assert(ptrDCurr + 1 == &(DCurr[j])); in GlobalAlignLE()
407 Rotate(DPrev, DCurr, DWork); in GlobalAlignLE()
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| H A D | muscle_context.h | 279 SCORE *DCurr; member
302 SCORE *DCurr; member
321 SCORE *DCurr; member
345 SCORE *DCurr; member
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| H A D | muscle_context.cpp | 437 delete[] glbalignsp.DPM.DCurr; in ~MuscleContext()
469 delete[] glbalignspn.DPM.DCurr; in ~MuscleContext()
496 delete[] glbalignle.DPM.DCurr; in ~MuscleContext()
523 delete[] glbalignss.DPM.DCurr; in ~MuscleContext()
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| /dports/archivers/snappy-java/snappy-java-1.1.7.5/src/test/resources/org/xerial/snappy/testdata/calgary/ |
| H A D | progp | 569 with DCurr do
591 with DCurr do
704 DCurr.LastHalve:=PC; PC:=0; Sr:=0;
732 DCurr.RHalve[PC]:=D;
825 DCurr.LastHalve:=PC; PC:=0; Sr:=0;
870 DCurr.RHalve[PC]:=D;
955 DCurr.LastHalve:=PC; PC:=0; Sr:=0;
983 DCurr.RHalve[PC]:=D;
1662 with I,DCurr do
1763 if DCurr.S[PC] > -1 then
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