Searched refs:DEL_ST (Results 1 – 6 of 6) sorted by relevance
46 #define DEL_ST 0 macro54 #define BEGIN_ST DEL_ST55 #define BIFURC_ST DEL_ST56 #define END_ST DEL_ST
282 copy_state_transitions(&icm[y], cm->nd[k].tmx[DEL_ST], tflags); in RearrangeCM()302 copy_state_transitions(&icm[y], cm->nd[k].tmx[DEL_ST], tflags); in RearrangeCM()468 { st->tmx[stx] = ILOG2(tvec[DEL_ST]); stx++; } in copy_state_transitions()590 copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[DEL_ST], tflags); in MakePCM()604 copy_pstate_transitions(&pcm[y], cm->nd[k].tmx[DEL_ST], tflags); in MakePCM()710 { st->tmx[stx] = tvec[DEL_ST]; stx++; } in copy_pstate_transitions()
361 trans[DEL_ST][END_ST] = gapcount[j]; in init_maxmx()370 (log(trans[DEL_ST][END_ST]) * gapcount[j])) in init_maxmx()389 trans[BEGIN_ST][DEL_ST] = gapcount[j]; in init_maxmx()394 (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) in init_maxmx()403 trans[BEGIN_ST][DEL_ST] = gapcount[j]; in init_maxmx()412 (log(trans[BEGIN_ST][DEL_ST]) * gapcount[j])) in init_maxmx()1293 fy = (aseqsT[i][idx] == -1) ? DEL_ST : MATL_ST; in frommatl_transtable()1359 fy = (aseqsT[j][idx] == -1) ? DEL_ST : MATR_ST; in frommatr_transtable()1597 else return DEL_ST; in assign_cell()1649 trans[fy][DEL_ST] = master_table[fy][DEL_ST] + master_table[fy][MATL_ST]; in to_matr_transtable()[all …]
47 case uDEL_ST: return DEL_ST; in StatetypeIndex()71 case DEL_ST: in UniqueStatetype()
47 case DEL_ST: return "DEL/BEG/BIF/END"; in StatetypeName()
418 cm->nd[curr->nodeidx].tmx[DEL_ST][StatetypeIndex(curr->nxtl->type)] += weight; in TraceCount()594 score += log(cm->nd[curr->nodeidx].tmx[DEL_ST][StatetypeIndex(curr->nxtl->type)]); in TraceScore()