Home
last modified time | relevance | path

Searched refs:Dbxref (Results 1 – 25 of 87) sorted by relevance

1234

/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/etc/
H A Dfeature_keys_gff11 …rives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id…
19 …rives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id…
33 polypeptide_domain ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
35 signal_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
36 match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
40 sequence_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
41 direct_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
42 inverted_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
43 dispersed_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_…
45 transposable_element ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term featur…
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/mason2/example/
H A Dadeno_virus_b.gff1 NC_001405 NCBI cds 559 1542 . + . ID=cds.1;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
2 NC_001405 NCBI cds 559 1542 . + . ID=cds.2;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
3 NC_001405 NCBI cds 559 1315 . + . ID=cds.3;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
4 …1 2238 . + . ID=cds.4;Alias=GENE:E1b_1,LocusTag:HAdVCgp02,GeneID:2652981;Dbxref=NCBI_PID:NP_040510…
6 …6 3503 . + . ID=cds.6;Alias=GENE:E1b_1,LocusTag:HAdVCgp02,GeneID:2652981;Dbxref=NCBI_PID:NP_040512…
9 NC_001405 NCBI cds 4081 5708 . - . ID=cds.9;Alias=GENE:IVa2;Dbxref=NCBI_PID:NP_040515.1,NCBI_GI:962…
10 NC_001405 NCBI cds 5187 8357 . - . ID=cds.10;Alias=GENE:DNA polymerase;Dbxref=NCBI_PID:NP_040516.1,…
11 NC_001405 NCBI cds 7968 8417 . + . ID=cds.11;Alias=GENE:L1,LocusTag:HAdVCgp12,GeneID:2652993;Dbxref…
17 NC_001405 NCBI cds 15873 16469 . + . ID=cds.17;Alias=GENE:Pro-VII;Dbxref=NCBI_PID:NP_040522.1,NCBI_…
22 NC_001405 NCBI cds 22490 24079 . - . ID=cds.22;Alias=GENE:DBP;Dbxref=NCBI_PID:NP_040527.1,NCBI_GI:9…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gff3writer_test_cases/
H A Drw-1080.entry.gff36 NM_002020.5 RefSeq region 1 4484 . + . ID=NM_002020.5:1..4484;Dbxref=taxon:9606;Name=5;chromosome=5…
11 NM_002020.5 RefSeq exon 1 113 . + . ID=id-FLT4;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:3767,M…
12 NM_002020.5 RefSeq exon 114 210 . + . ID=id-FLT4-2;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
13 NM_002020.5 RefSeq exon 211 455 . + . ID=id-FLT4-3;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
14 NM_002020.5 RefSeq exon 456 568 . + . ID=id-FLT4-4;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
15 NM_002020.5 RefSeq exon 569 731 . + . ID=id-FLT4-5;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
16 NM_002020.5 RefSeq exon 732 871 . + . ID=id-FLT4-6;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
17 NM_002020.5 RefSeq exon 872 1040 . + . ID=id-FLT4-7;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:3…
18 NM_002020.5 RefSeq exon 1041 1158 . + . ID=id-FLT4-8;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:…
19 NM_002020.5 RefSeq exon 1159 1313 . + . ID=id-FLT4-9;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:…
[all …]
H A Drw-1196-hep-b.entry.gff34 AF121239.1 GenInfo CDS 2307 3182 . + 0 ID=cds-AAF24660.1;Dbxref=NCBI_GP:AAF24660.1;Name=AAF24660.1;…
5 AF121239.1 GenInfo CDS 1 1623 . + 0 ID=cds-AAF24660.1;Dbxref=NCBI_GP:AAF24660.1;Name=AAF24660.1;gbk…
6 AF121239.1 GenInfo CDS 2848 3182 . + 0 ID=cds-AAF24661.1;Dbxref=NCBI_GP:AAF24661.1;Name=AAF24661.1;…
7 AF121239.1 GenInfo CDS 1 835 . + 1 ID=cds-AAF24661.1;Dbxref=NCBI_GP:AAF24661.1;Name=AAF24661.1;gbke…
8 AF121239.1 GenInfo CDS 3172 3182 . + 0 ID=cds-AAF24662.1;Dbxref=NCBI_GP:AAF24662.1;Name=AAF24662.1;…
9 AF121239.1 GenInfo CDS 1 835 . + 1 ID=cds-AAF24662.1;Dbxref=NCBI_GP:AAF24662.1;Name=AAF24662.1;gbke…
10 AF121239.1 GenInfo CDS 155 835 . + 0 ID=cds-AAF24663.1;Dbxref=NCBI_GP:AAF24663.1;Name=AAF24663.1;gb…
11 AF121239.1 GenInfo CDS 1374 1838 . + 0 ID=cds-AAF24659.1;Dbxref=NCBI_GP:AAF24659.1;Name=AAF24659.1;…
12 AF121239.1 GenInfo CDS 1901 2452 . + 0 ID=cds-AAF24664.1;Dbxref=NCBI_GP:AAF24664.1;Name=AAF24664.1;…
17 AF121239.1 Genbank CDS 1374 1838 . + 0 ID=cds-AAF24659.1-2;Parent=gene-X;Dbxref=NCBI_GP:AAF24659.1;…
[all …]
H A Drw-568-1.entry.gff36 NW_004504305.1 RefSeq region 1 74013 . + . ID=NW_004504305.1:1..74013;Dbxref=taxon:9606;Name=22;chr…
31 NW_004504305.1 BestRefSeq exon 9405 9520 . - . ID=exon-NM_002490.4-2;Parent=rna-NM_002490.4;Dbxref=…
32 NW_004504305.1 BestRefSeq exon 7871 8659 . - . ID=exon-NM_002490.4-3;Parent=rna-NM_002490.4;Dbxref=…
36 NW_004504305.1 BestRefSeq gene 13278 47676 . + . ID=gene-NDUFA6-AS1;Dbxref=GeneID:100132273,HGNC:HG…
43 NW_004504305.1 Curated Genomic pseudogene 29695 31454 . - . ID=gene-OLA1P1;Dbxref=GeneID:246785,HGN…
44 NW_004504305.1 Curated Genomic exon 29695 31454 . - . ID=id-OLA1P1;Parent=gene-OLA1P1;Dbxref=GeneID…
45 NW_004504305.1 Gnomon gene 44510 45910 . - . ID=gene-LOC105373047;Dbxref=GeneID:105373047;Name=LOC1…
47 …xon 45824 45910 . - . ID=exon-XR_001756670.1-1;Parent=rna-XR_001756670.1;Dbxref=GeneID:105373047,G…
48 …xon 44510 44885 . - . ID=exon-XR_001756670.1-2;Parent=rna-XR_001756670.1;Dbxref=GeneID:105373047,G…
86 NW_004504305.1 Gnomon gene 50667 73413 . + . ID=gene-LOC102723722;Dbxref=GeneID:102723722;Name=LOC1…
[all …]
H A Drw-568-3.entry.gff36 NT_187557.1 RefSeq region 1 75005 . + . ID=NT_187557.1:1..75005;Dbxref=taxon:9606;Name=6;chromosome…
8 NT_187557.1 BestRefSeq gene 16390 36368 . + . ID=gene-LOC101929297;Dbxref=GeneID:101929297;Name=LOC…
10 NT_187557.1 BestRefSeq exon 16390 16461 . + . ID=exon-NR_125862.1-1;Parent=rna-NR_125862.1;Dbxref=G…
11 NT_187557.1 BestRefSeq exon 22223 23349 . + . ID=exon-NR_125862.1-2;Parent=rna-NR_125862.1;Dbxref=G…
12 NT_187557.1 BestRefSeq exon 33838 33926 . + . ID=exon-NR_125862.1-3;Parent=rna-NR_125862.1;Dbxref=G…
13 NT_187557.1 BestRefSeq exon 34393 34445 . + . ID=exon-NR_125862.1-4;Parent=rna-NR_125862.1;Dbxref=G…
14 NT_187557.1 BestRefSeq exon 36162 36368 . + . ID=exon-NR_125862.1-5;Parent=rna-NR_125862.1;Dbxref=G…
16 NT_187557.1 Curated Genomic exon 19349 19554 . - . ID=id-GNG5P1;Parent=gene-GNG5P1;Dbxref=GeneID:27…
17 NT_187557.1 Curated Genomic exon 19677 19978 . - . ID=id-GNG5P1-2;Parent=gene-GNG5P1;Dbxref=GeneID:…
18 NT_187557.1 Gnomon gene 34107 38615 . - . ID=gene-LOC107986668;Dbxref=GeneID:107986668;Name=LOC1079…
[all …]
H A Drw-568-2.entry.gff321 AE014135.4 Genbank mobile_genetic_element 5057 5194 . + . ID=id-AE014135.4:5057..5194;Dbxref=FLYBAS…
22 AE014135.4 Genbank mobile_genetic_element 5464 5498 . + . ID=id-AE014135.4:5464..5498;Dbxref=FLYBAS…
29 AE014135.4 Genbank mobile_genetic_element 11838 11975 . + . ID=id-AE014135.4:11838..11975;Dbxref=FL…
30 AE014135.4 Genbank mobile_genetic_element 12245 12279 . + . ID=id-AE014135.4:12245..12279;Dbxref=FL…
38 AE014135.4 Genbank mobile_genetic_element 25134 26234 . - . ID=id-AE014135.4:25134..26234;Dbxref=FL…
39 AE014135.4 Genbank mobile_genetic_element 26248 26352 . + . ID=id-AE014135.4:26248..26352;Dbxref=FL…
40 AE014135.4 Genbank mobile_genetic_element 26625 26659 . + . ID=id-AE014135.4:26625..26659;Dbxref=FL…
46 AE014135.4 Genbank mobile_genetic_element 31706 31843 . + . ID=id-AE014135.4:31706..31843;Dbxref=FL…
70 AE014135.4 Genbank mobile_genetic_element 33824 35293 . + . ID=id-AE014135.4:33824..35293;Dbxref=FL…
72 AE014135.4 Genbank mobile_genetic_element 42505 42593 . + . ID=id-AE014135.4:42505..42593;Dbxref=FL…
[all …]
H A Drw-234.annot.gff34 U00096.3 Genbank gene 190 255 . + . ID=gene-MSS635_000001;Dbxref=EcoGene:EG11277;Name=thrL;gbkey=Ge…
5 U00096.3 Genbank antisense_RNA 190 199 . + . ID=rna-MSS635_000001;Parent=gene-MSS635_000001;Dbxref=…
6 U00096.3 Genbank exon 190 199 . + . ID=exon-MSS635_000001-1;Parent=rna-MSS635_000001;Dbxref=EcoGene…
7 …sense_RNA 200 209 . + . ID=rna-MSS635_000001-2;Parent=gene-MSS635_000001;Dbxref=EcoGene:EG11277;fu…
8 U00096.3 Genbank exon 200 209 . + . ID=exon-MSS635_000001-2-1;Parent=rna-MSS635_000001-2;Dbxref=Eco…
9 U00096.3 Genbank ncRNA 210 219 . + . ID=rna-MSS635_000001-3;Parent=gene-MSS635_000001;Dbxref=EcoGen…
10 U00096.3 Genbank exon 210 219 . + . ID=exon-MSS635_000001-3-1;Parent=rna-MSS635_000001-3;Dbxref=Eco…
11 U00096.3 Genbank lnc_RNA 220 229 . + . ID=rna-MSS635_000001-4;Parent=gene-MSS635_000001;Dbxref=EcoG…
12 U00096.3 Genbank exon 220 229 . + . ID=exon-MSS635_000001-4-1;Parent=rna-MSS635_000001-4;Dbxref=Eco…
H A Drw-568-4.entry.gff36 GU182347.1 Genbank region 1 223161 . + . ID=GU182347.1:1..223161;Dbxref=taxon:9606;Name=19;chromoso…
18 GU182347.1 Genbank CDS 475 508 . + 0 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ94578.1…
19 GU182347.1 Genbank CDS 1186 1221 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ94578…
20 GU182347.1 Genbank CDS 1992 2276 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ94578…
21 GU182347.1 Genbank CDS 3550 3849 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ94578…
22 GU182347.1 Genbank CDS 5428 5721 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ94578…
23 GU182347.1 Genbank CDS 11189 11293 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ945…
24 GU182347.1 Genbank CDS 11756 11808 . + 2 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ945…
25 GU182347.1 Genbank CDS 11907 12032 . + 0 ID=cds-ADJ94578.1;Parent=rna-KIR3DL3;Dbxref=NCBI_GP:ADJ945…
36 GU182347.1 Genbank CDS 14499 14532 . + 0 ID=cds-ADJ94579.1;Parent=rna-KIR2DS2;Dbxref=NCBI_GP:ADJ945…
[all …]
H A Drw-246-precursor-RNA.entry.gff36 NW_007566280.1 RefSeq region 1 419 . + . ID=NW_007566280.1:1..419;Dbxref=taxon:3656;Name=Unknown;ch…
7 NW_007566280.1 BestRefSeq gene 243 415 . - . ID=gene-MIR156I;Dbxref=GeneID:103318442,miRBase:MI0023…
8 … primary_transcript 243 415 . - . ID=rna-NR_120723.1;Parent=gene-MIR156I;Dbxref=GeneID:103318442,G…
9 NW_007566280.1 BestRefSeq exon 243 415 . - . ID=exon-NR_120723.1-1;Parent=rna-NR_120723.1;Dbxref=Ge…
10 NW_007566280.1 BestRefSeq miRNA 339 358 . - . ID=rna-MIR156I;Parent=rna-NR_120723.1;Dbxref=GeneID:1…
11 NW_007566280.1 BestRefSeq exon 339 358 . - . ID=exon-MIR156I-1;Parent=rna-MIR156I;Dbxref=GeneID:103…
H A Drw-310.entry.gff36 LK023325.1 EMBL region 1 483973 . + . ID=LK023325.1:1..483973;Dbxref=taxon:688394;gbkey=Src;mol_typ…
63 LK023325.1 EMBL CDS 9682 9857 . + 0 ID=cds-CDS08391.1;Parent=rna-LRAMOSA09754;Dbxref=EnsemblGenomes…
64 LK023325.1 EMBL CDS 9910 10018 . + 1 ID=cds-CDS08391.1;Parent=rna-LRAMOSA09754;Dbxref=EnsemblGenome…
65 LK023325.1 EMBL CDS 10102 10299 . + 0 ID=cds-CDS08391.1;Parent=rna-LRAMOSA09754;Dbxref=EnsemblGenom…
66 LK023325.1 EMBL CDS 10372 10500 . + 0 ID=cds-CDS08391.1;Parent=rna-LRAMOSA09754;Dbxref=EnsemblGenom…
85 LK023325.1 EMBL CDS 21891 21930 . + 0 ID=cds-CDS08393.1;Parent=rna-LRAMOSA09756;Dbxref=EnsemblGenom…
86 LK023325.1 EMBL CDS 21992 23019 . + 2 ID=cds-CDS08393.1;Parent=rna-LRAMOSA09756;Dbxref=EnsemblGenom…
142 LK023325.1 EMBL CDS 30189 30714 . + 0 ID=cds-CDS08397.1;Parent=rna-LRAMOSA09760;Dbxref=EnsemblGenom…
143 LK023325.1 EMBL CDS 30769 30978 . + 2 ID=cds-CDS08397.1;Parent=rna-LRAMOSA09760;Dbxref=EnsemblGenom…
144 LK023325.1 EMBL CDS 31034 31114 . + 2 ID=cds-CDS08397.1;Parent=rna-LRAMOSA09760;Dbxref=EnsemblGenom…
[all …]
H A Drw-170.entry.gff328 NC_002058.3 RefSeq gene 743 7372 . + . ID=gene-PVgp1;Dbxref=GeneID:919920;Name=PVgp1;gbkey=Gene;gen…
49 NC_002058.3 RefSeq sequence_conflict 1467 1468 . + . ID=id-PVgp1;Dbxref=GeneID:919920;Note=GG is G …
50 NC_002058.3 RefSeq sequence_conflict 1529 1530 . + . ID=id-PVgp1-2;Dbxref=GeneID:919920;Note=CC is …
51 NC_002058.3 RefSeq sequence_conflict 1534 1535 . + . ID=id-PVgp1-3;Dbxref=GeneID:919920;Note=CC is …
52 NC_002058.3 RefSeq sequence_conflict 1547 1547 . + . ID=id-PVgp1-4;Dbxref=GeneID:919920;Note=C is U…
53 NC_002058.3 RefSeq sequence_conflict 1579 1579 . + . ID=id-PVgp1-5;Dbxref=GeneID:919920;Note=C is A…
54 NC_002058.3 RefSeq sequence_conflict 1601 1601 . + . ID=id-PVgp1-6;Dbxref=GeneID:919920;Note=A is C…
55 NC_002058.3 RefSeq sequence_conflict 1668 1668 . + . ID=id-PVgp1-7;Dbxref=GeneID:919920;Note=C is U…
56 NC_002058.3 RefSeq sequence_conflict 2001 2001 . + . ID=id-PVgp1-8;Dbxref=GeneID:919920;Note=A is C…
58 NC_002058.3 RefSeq sequence_conflict 2035 2035 . + . ID=id-PVgp1-10;Dbxref=GeneID:919920;Note=U is …
[all …]
H A Dmss-346.bioseq.gff38 1000000 GenInfo CDS 1 4001 . + 0 ID=cds-MSS-346;Parent=rna-MSS-346;Dbxref=NCBI_gi:1000000;Name=1000…
11 1000000 GenInfo CDS 5001 9001 . + 0 ID=cds-MSS-346-2;Parent=rna-MSS-346-2;Dbxref=NCBI_gi:1000000;Na…
15 1000000 GenInfo CDS 10001 14001 . + 0 ID=cds-MSS-346-3;Parent=rna-MSS-346-3;Dbxref=NCBI_gi:1000000;…
27 1000000 GenInfo CDS 25001 29001 . + 0 ID=cds-MSS-346-6;Parent=rna-MSS-346-7;Dbxref=NCBI_gi:1000000;…
36 1000000 GenInfo CDS 35001 39001 . + 0 ID=cds-MSS-346-8;Parent=rna-MSS-346-10;Dbxref=NCBI_gi:1000000…
45 1000000 GenInfo CDS 45001 49001 . + 0 ID=cds-MSS-346-10;Parent=rna-MSS-346-12;Dbxref=NCBI_gi:100000…
54 1000000 GenInfo CDS 55001 59001 . + 0 ID=cds-MSS-346-12;Parent=rna-MSS-346-15;Dbxref=NCBI_gi:100000…
70 1000000 GenInfo CDS 72001 74001 . + 0 ID=cds-MSS-346-14;Parent=rna-MSS-346-18;Dbxref=NCBI_gi:100000…
81 1000000 GenInfo CDS 82001 84001 . + 0 ID=cds-MSS-346-16;Parent=rna-MSS-346-21;Dbxref=NCBI_gi:100000…
89 1000000 GenInfo CDS 90001 92001 . + 0 ID=cds-MSS-346-17;Parent=rna-MSS-346-23;Dbxref=NCBI_gi:100000…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases/
H A Drw-1196-hep-b.gff34 AF121239.1 GenInfo CDS 2307 3182 . + 0 ID=cds-AAF24660.1;Dbxref=NCBI_GP:AAF24660.1;Name=AAF24660.1;…
5 AF121239.1 GenInfo CDS 1 1623 . + 0 ID=cds-AAF24660.1;Dbxref=NCBI_GP:AAF24660.1;Name=AAF24660.1;gbk…
6 AF121239.1 GenInfo CDS 2848 3182 . + 0 ID=cds-AAF24661.1;Dbxref=NCBI_GP:AAF24661.1;Name=AAF24661.1;…
7 AF121239.1 GenInfo CDS 1 835 . + 1 ID=cds-AAF24661.1;Dbxref=NCBI_GP:AAF24661.1;Name=AAF24661.1;gbke…
8 AF121239.1 GenInfo CDS 3172 3182 . + 0 ID=cds-AAF24662.1;Dbxref=NCBI_GP:AAF24662.1;Name=AAF24662.1;…
9 AF121239.1 GenInfo CDS 1 835 . + 1 ID=cds-AAF24662.1;Dbxref=NCBI_GP:AAF24662.1;Name=AAF24662.1;gbke…
10 AF121239.1 GenInfo CDS 155 835 . + 0 ID=cds-AAF24663.1;Dbxref=NCBI_GP:AAF24663.1;Name=AAF24663.1;gb…
11 AF121239.1 GenInfo CDS 1374 1838 . + 0 ID=cds-AAF24659.1;Dbxref=NCBI_GP:AAF24659.1;Name=AAF24659.1;…
12 AF121239.1 GenInfo CDS 1901 2452 . + 0 ID=cds-AAF24664.1;Dbxref=NCBI_GP:AAF24664.1;Name=AAF24664.1;…
17 AF121239.1 Genbank CDS 1374 1838 . + 0 ID=cds-AAF24659.1-2;Parent=gene-X;Dbxref=NCBI_GP:AAF24659.1;…
[all …]
H A Drw-228.gff37 NW_006763130.1 RefSeq STS 1567 1918 . + . ID=id2;Dbxref=UniSTS:130925;gbkey=STS
8 NW_006763130.1 RefSeq STS 5922 6062 . + . ID=id123;Dbxref=UniSTS:166300;gbkey=STS
25 NW_006763130.1 RefSeq STS 18473 18612 . + . ID=id389;Dbxref=UniSTS:143711;gbkey=STS
26 NW_006763130.1 RefSeq STS 24592 24615 . + . ID=id644;Dbxref=UniSTS:271146;gbkey=STS
27 NW_006763130.1 RefSeq STS 33151 33253 . + . ID=id936;Dbxref=UniSTS:258434;gbkey=STS
28 NW_006763130.1 RefSeq STS 62098 62357 . + . ID=id1777;Dbxref=UniSTS:258348;gbkey=STS
68 NW_006763130.1 RefSeq STS 64927 65263 . + . ID=id1856;Dbxref=UniSTS:166310;gbkey=STS
69 NW_006763130.1 RefSeq STS 74300 74538 . + . ID=id2176;Dbxref=UniSTS:143717;gbkey=STS
70 NW_006763130.1 RefSeq STS 74909 76379 . + . ID=id2208;Dbxref=UniSTS:143715;gbkey=STS
73 NW_006763130.1 RefSeq STS 110850 111187 . + . ID=id3727;Dbxref=UniSTS:166310;gbkey=STS
[all …]
H A Drw-11.gff37 U00096.3 EcoCyc gene 190 255 . + . ID=gene0;Dbxref=EcoGene:EG11277;gene=thrL;gene_synonym=ECK0001,J…
8 U00096.3 EcoCyc cds 190 255 . + 0 ID=cds0;Parent=gene0;Dbxref=ASAP:ABE-0000006,UniProtKB/Swiss-Prot…
9 U00096.3 EcoCyc gene 337 2799 . + . ID=gene1;Dbxref=EcoGene:EG10998;gene=thrA;gene_synonym=ECK0002,…
13 U00096.3 EcoCyc gene 16952 17006 . + . ID=gene17;Dbxref=EcoGene:EG31128;gene=sokC;gene_synonym=ECK0…
14 U00096.3 EcoCyc ncrna 16952 17006 . + . ID=rna0;Parent=gene17;Dbxref=ASAP:ABE-0047238;Note=IS186A i…
15 U00096.3 EcoCyc gene 2755593 2755955 . + . ID=gene2687;Dbxref=EcoGene:EG30100;gene=ssrA;gene_synony…
19 U00096.3 EcoCyc gene 2785762 2785837 . - . ID=gene2717;Dbxref=EcoGene:EG31121;gene=ileY;gene_synony…
20 U00096.3 EcoCyc trna 2785762 2785837 . - . ID=rna90;Parent=gene2717;Dbxref=ASAP:ABE-0008733;Note=an…
22 U00096.3 EcoCyc gene 3423423 3423542 . - . ID=gene3334;Dbxref=EcoGene:EG30091;gene=rrfF;gene_synony…
23 U00096.3 EcoCyc rrna 3423423 3423542 . - . ID=rna117;Parent=gene3334;Dbxref=ASAP:ABE-0010740;produc…
[all …]
H A Dmss-528.gff38 U00096.3 EcoCyc gene 190 255 . + . ID=gene0;Dbxref=EcoGene:EG11277;gene=thrL;gene_synonym=ECK0001,J…
11 U00096.3 EcoCyc CDS 190 255 . + 0 ID=cds0;Parent=mrna0;Dbxref=ASAP:ABE-0000006,UniProtKB/Swiss-Prot…
12 U00096.3 EcoCyc gene 337 2799 . + . ID=gene1;Dbxref=EcoGene:EG10998;gene=thrA;gene_synonym=ECK0002,…
18 U00096.3 EcoCyc gene 16952 17006 . + . ID=gene17;Dbxref=EcoGene:EG31128;gene=sokC;gene_synonym=ECK0…
19 U00096.3 EcoCyc ncRNA 16952 17006 . + . ID=rna0;Parent=gene17;Dbxref=ASAP:ABE-0047238;Note=IS186A i…
20 U00096.3 EcoCyc gene 2755593 2755955 . + . ID=gene2687;Dbxref=EcoGene:EG30100;gene=ssrA;gene_synony…
24 U00096.3 EcoCyc gene 2785762 2785837 . - . ID=gene2717;Dbxref=EcoGene:EG31121;gene=ileY;gene_synony…
25 U00096.3 EcoCyc tRNA 2785762 2785837 . - . ID=rna90;Parent=gene2717;Dbxref=ASAP:ABE-0008733;Note=an…
27 U00096.3 EcoCyc gene 3423423 3423542 . - . ID=gene3334;Dbxref=EcoGene:EG30091;gene=rrfF;gene_synony…
28 U00096.3 EcoCyc rRNA 3423423 3423542 . - . ID=rna117;Parent=gene3334;Dbxref=ASAP:ABE-0010740;produc…
[all …]
/dports/biology/py-gffutils/gffutils-0.10.1/gffutils/test/data/
H A Ddmel-all-no-analysis-r5.49_50k_lines.gff20 2L FlyBase chromosome_arm 1 23011544 . . . ID=2L;Name=2L;Dbxref=REFSEQ:NT_033779,GB:AE014134
87 2L DGRC_1 pcr_product 8272 8589 . + . ID=INC121G01_pcr_product;Name=INC121G01;Dbxref=DGRC-1:INC121G…
162 2L DGRC_1 pcr_product 10759 11182 . + . ID=INC002E03_pcr_product;Name=INC002E03;Dbxref=DGRC-1:INC00…
405 2L DGRC_1 pcr_product 22051 22612 . + . ID=INC069C04_pcr_product;Name=INC069C04;Dbxref=DGRC-1:INC06…
551 2L DGRC_1 pcr_product 27051 27464 . + . ID=INC012H12_pcr_product;Name=INC012H12;Dbxref=DGRC-1:INC01…
703 2L DGRC_1 pcr_product 39268 39711 . + . ID=INC017G09_pcr_product;Name=INC017G09;Dbxref=DGRC-1:INC01…
920 2L DGRC_1 pcr_product 68789 69380 . + . ID=INC087G11_pcr_product;Name=INC087G11;Dbxref=DGRC-1:INC08…
1066 2L DGRC_1 pcr_product 75090 75515 . + . ID=INC087H03_pcr_product;Name=INC087H03;Dbxref=DGRC-1:INC08…
1111 2L DGRC_1 pcr_product 76830 77340 . + . ID=INC087H05_pcr_product;Name=INC087H05;Dbxref=DGRC-1:INC08…
1190 2L DGRC_1 pcr_product 83625 84170 . + . ID=INC045H12_pcr_product;Name=INC045H12;Dbxref=DGRC-1:INC04…
[all …]
/dports/biology/gffread/gffread-0.12.7/examples/
H A Dannotation.gff1 NT_187562.1 BestRefSeq gene 411 68627 . + . ID=gene55473;Dbxref=GeneID:8972,HGNC:HGNC:7043,MIM:1543…
63 NT_187562.1 Curated Genomic gene 214038 219958 . - . ID=gene55476;Dbxref=GeneID:136541,HGNC:HGNC:39…
71 NT_187562.1 Curated Genomic CDS 219568 219607 . - 0 ID=cds110498;Parent=rna157473;Dbxref=GeneID:136…
72 NT_187562.1 Curated Genomic CDS 217435 217573 . - 2 ID=cds110498;Parent=rna157473;Dbxref=GeneID:136…
76 NT_187562.1 BestRefSeq gene 962573 963937 . + . ID=gene55581;Dbxref=GeneID:135927,HGNC:HGNC:21750;N…
77 NT_187562.1 BestRefSeq mRNA 962573 963937 . + . ID=rna157497;Parent=gene55581;Dbxref=GeneID:135927,…
78 NT_187562.1 BestRefSeq exon 962573 962821 . + . ID=id1809397;Parent=rna157497;Dbxref=GeneID:135927,…
79 NT_187562.1 BestRefSeq exon 963419 963937 . + . ID=id1809398;Parent=rna157497;Dbxref=GeneID:135927,…
80 NT_187562.1 BestRefSeq CDS 962614 962821 . + 0 ID=cds110593;Parent=rna157497;Dbxref=GeneID:135927,G…
81 NT_187562.1 BestRefSeq CDS 963419 963654 . + 2 ID=cds110593;Parent=rna157497;Dbxref=GeneID:135927,G…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases_genbank/
H A Drw-228.gff37 NW_006763130.1 RefSeq STS 1567 1918 . + . ID=id2;Dbxref=UniSTS:130925;gbkey=STS
8 NW_006763130.1 RefSeq STS 5922 6062 . + . ID=id123;Dbxref=UniSTS:166300;gbkey=STS
25 NW_006763130.1 RefSeq STS 18473 18612 . + . ID=id389;Dbxref=UniSTS:143711;gbkey=STS
26 NW_006763130.1 RefSeq STS 24592 24615 . + . ID=id644;Dbxref=UniSTS:271146;gbkey=STS
27 NW_006763130.1 RefSeq STS 33151 33253 . + . ID=id936;Dbxref=UniSTS:258434;gbkey=STS
28 NW_006763130.1 RefSeq STS 62098 62357 . + . ID=id1777;Dbxref=UniSTS:258348;gbkey=STS
68 NW_006763130.1 RefSeq STS 64927 65263 . + . ID=id1856;Dbxref=UniSTS:166310;gbkey=STS
69 NW_006763130.1 RefSeq STS 74300 74538 . + . ID=id2176;Dbxref=UniSTS:143717;gbkey=STS
70 NW_006763130.1 RefSeq STS 74909 76379 . + . ID=id2208;Dbxref=UniSTS:143715;gbkey=STS
73 NW_006763130.1 RefSeq STS 110850 111187 . + . ID=id3727;Dbxref=UniSTS:166310;gbkey=STS
[all …]
H A Drw-11.gff37 U00096.3 EcoCyc gene 190 255 . + . ID=gene0;Dbxref=EcoGene:EG11277;gene=thrL;gene_synonym=ECK0001,J…
8 U00096.3 EcoCyc cds 190 255 . + 0 ID=cds0;Parent=gene0;Dbxref=ASAP:ABE-0000006,UniProtKB/Swiss-Prot…
9 U00096.3 EcoCyc gene 337 2799 . + . ID=gene1;Dbxref=EcoGene:EG10998;gene=thrA;gene_synonym=ECK0002,…
13 U00096.3 EcoCyc gene 16952 17006 . + . ID=gene17;Dbxref=EcoGene:EG31128;gene=sokC;gene_synonym=ECK0…
14 U00096.3 EcoCyc ncrna 16952 17006 . + . ID=rna0;Parent=gene17;Dbxref=ASAP:ABE-0047238;Note=IS186A i…
15 U00096.3 EcoCyc gene 2755593 2755955 . + . ID=gene2687;Dbxref=EcoGene:EG30100;gene=ssrA;gene_synony…
19 U00096.3 EcoCyc gene 2785762 2785837 . - . ID=gene2717;Dbxref=EcoGene:EG31121;gene=ileY;gene_synony…
20 U00096.3 EcoCyc trna 2785762 2785837 . - . ID=rna90;Parent=gene2717;Dbxref=ASAP:ABE-0008733;Note=an…
22 U00096.3 EcoCyc gene 3423423 3423542 . - . ID=gene3334;Dbxref=EcoGene:EG30091;gene=rrfF;gene_synony…
23 U00096.3 EcoCyc rrna 3423423 3423542 . - . ID=rna117;Parent=gene3334;Dbxref=ASAP:ABE-0010740;produc…
[all …]
H A Dmss-528.gff38 U00096.3 EcoCyc gene 190 255 . + . ID=gene0;Dbxref=EcoGene:EG11277;gene=thrL;gene_synonym=ECK0001,J…
11 U00096.3 EcoCyc CDS 190 255 . + 0 ID=cds0;Parent=mrna0;Dbxref=ASAP:ABE-0000006,UniProtKB/Swiss-Prot…
12 U00096.3 EcoCyc gene 337 2799 . + . ID=gene1;Dbxref=EcoGene:EG10998;gene=thrA;gene_synonym=ECK0002,…
18 U00096.3 EcoCyc gene 16952 17006 . + . ID=gene17;Dbxref=EcoGene:EG31128;gene=sokC;gene_synonym=ECK0…
19 U00096.3 EcoCyc ncRNA 16952 17006 . + . ID=rna0;Parent=gene17;Dbxref=ASAP:ABE-0047238;Note=IS186A i…
20 U00096.3 EcoCyc gene 2755593 2755955 . + . ID=gene2687;Dbxref=EcoGene:EG30100;gene=ssrA;gene_synony…
24 U00096.3 EcoCyc gene 2785762 2785837 . - . ID=gene2717;Dbxref=EcoGene:EG31121;gene=ileY;gene_synony…
25 U00096.3 EcoCyc tRNA 2785762 2785837 . - . ID=rna90;Parent=gene2717;Dbxref=ASAP:ABE-0008733;Note=an…
27 U00096.3 EcoCyc gene 3423423 3423542 . - . ID=gene3334;Dbxref=EcoGene:EG30091;gene=rrfF;gene_synony…
28 U00096.3 EcoCyc rRNA 3423423 3423542 . - . ID=rna117;Parent=gene3334;Dbxref=ASAP:ABE-0010740;produc…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/import/unit_test/data/input/
H A Dtest-multi-rna.gff38 U00096.3 EcoCyc gene 190 255 . + . ID=gene0;Dbxref=EcoGene:EG11277;gene=thrL;gene_synonym=ECK0001,J…
11 U00096.3 EcoCyc CDS 190 255 . + 0 ID=cds0;Parent=mrna0;Dbxref=ASAP:ABE-0000006,UniProtKB/Swiss-Prot…
12 U00096.3 EcoCyc gene 337 2799 . + . ID=gene1;Dbxref=EcoGene:EG10998;gene=thrA;gene_synonym=ECK0002,…
18 U00096.3 EcoCyc gene 16952 17006 . + . ID=gene17;Dbxref=EcoGene:EG31128;gene=sokC;gene_synonym=ECK0…
19 U00096.3 EcoCyc ncRNA 16952 17006 . + . ID=rna0;Parent=gene17;Dbxref=ASAP:ABE-0047238;Note=IS186A i…
20 U00096.3 EcoCyc gene 2755593 2755955 . + . ID=gene2687;Dbxref=EcoGene:EG30100;gene=ssrA;gene_synony…
24 U00096.3 EcoCyc gene 2785762 2785837 . - . ID=gene2717;Dbxref=EcoGene:EG31121;gene=ileY;gene_synony…
25 U00096.3 EcoCyc tRNA 2785762 2785837 . - . ID=rna90;Parent=gene2717;Dbxref=ASAP:ABE-0008733;Note=an…
27 U00096.3 EcoCyc gene 3423423 3423542 . - . ID=gene3334;Dbxref=EcoGene:EG30091;gene=rrfF;gene_synony…
28 U00096.3 EcoCyc rRNA 3423423 3423542 . - . ID=rna117;Parent=gene3334;Dbxref=ASAP:ABE-0010740;produc…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gvfreader_test_cases/
H A Drw224_insertion.gvf11 …1;Name=essv10018516;Alias=ALU_umary_ALU_356_A1_HG04216;parent=esv3586815;Dbxref=URL:www.ncbi.nlm.n…
12 …0;Name=essv10008445;Alias=L1_umary_LINE1_80_A1_HG01956;parent=esv3586714;Dbxref=URL:www.ncbi.nlm.n…
13 …93;Name=essv10008578;Alias=SVA_umary_SVA_42_A1_HG01372;parent=esv3586726;Dbxref=URL:www.ncbi.nlm.n…
14 NC_000006.11 dbVar insertion 8054167 8054167 . . . ID=1083970;Name=esv987517;Alias=sv19078;Dbxref=U…
15 …nsertion 136203039 136203039 . . . ID=4633762;Name=esv3310418;Alias=NS98;Dbxref=URL:www.ncbi.nlm.n…
16 …ion 55616763 55616764 . . . ID=4626449;Name=esv3303103;Alias=P1_MEI_4502;Dbxref=URL:www.ncbi.nlm.n…
H A Drw224_translocation.gvf11 …5185032 . . . ID=13538344;Name=nssv3761984;Alias=10269;parent=nsv1068006;Dbxref=URL:www.ncbi.nlm.n…
12 …5185092 . . . ID=13538345;Name=nssv3761984;Alias=10269;parent=nsv1068006;Dbxref=URL:www.ncbi.nlm.n…
13 NC_000010.10 dbVar translocation 20835053 20835053 . . . ID=11;Name=nsv1067937;Alias=10048;Dbxref=U…
14 …0273007 . . . ID=13538418;Name=nssv3762047;Alias=10652;parent=nsv1068099;Dbxref=URL:www.ncbi.nlm.n…
15 …4178041 . . . ID=13538417;Name=nssv3762047;Alias=10652;parent=nsv1068099;Dbxref=URL:www.ncbi.nlm.n…

1234