| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/validator/ |
| H A D | validerror_base.hpp | 54 void PostErr(EDiagSev sv, EErrType et, const string& msg,
57 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_feat& ft);
58 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CBioseq& sq);
59 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_entry& ctx,
61 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CBioseq_set& set);
62 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_annot& annot);
63 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_graph& graph);
64 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CBioseq& sq,
66 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_align& align);
67 void PostErr(EDiagSev sv, EErrType et, const string& msg, const CSeq_entry& entry);
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| H A D | validerror_imp.hpp | 194 void PostErr(EDiagSev sv, EErrType et, const string& msg,
196 void PostErr(EDiagSev sv, EErrType et, const string& msg, TDesc ds);
197 void PostErr(EDiagSev sv, EErrType et, const string& msg, TFeat ft);
198 void PostErr(EDiagSev sv, EErrType et, const string& msg, TBioseq sq);
199 void PostErr(EDiagSev sv, EErrType et, const string& msg, TEntry ctx,
201 void PostErr(EDiagSev sv, EErrType et, const string& msg, TSet set);
202 void PostErr(EDiagSev sv, EErrType et, const string& msg, TAnnot annot);
203 void PostErr(EDiagSev sv, EErrType et, const string& msg, TGraph graph);
204 void PostErr(EDiagSev sv, EErrType et, const string& msg, TBioseq sq,
328 bool IsNoncuratedRefSeq(const CBioseq& seq, EDiagSev& sev);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/valerr/ |
| H A D | ValidError.hpp | 65 void AddValidErrItem(EDiagSev sev, // severity
75 void AddValidErrItem(EDiagSev sev, // severity
86 void AddValidErrItem(EDiagSev sev, // severity
96 void AddValidErrItem(EDiagSev sev, // severity
104 SIZE_TYPE Size(EDiagSev sev) const;
125 typedef map<EDiagSev, SIZE_TYPE> TSevStats;
148 EDiagSev minsev = eDiagSevMin,
149 EDiagSev maxsev = eDiagSevMax);
172 EDiagSev m_MinSeverity;
173 EDiagSev m_MaxSeverity;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/valerr/ |
| H A D | ValidError.hpp | 65 void AddValidErrItem(EDiagSev sev, // severity
75 void AddValidErrItem(EDiagSev sev, // severity
86 void AddValidErrItem(EDiagSev sev, // severity
96 void AddValidErrItem(EDiagSev sev, // severity
104 SIZE_TYPE Size(EDiagSev sev) const;
125 typedef map<EDiagSev, SIZE_TYPE> TSevStats;
148 EDiagSev minsev = eDiagSevMin,
149 EDiagSev maxsev = eDiagSevMax);
172 EDiagSev m_MinSeverity;
173 EDiagSev m_MaxSeverity;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/pubseq_gateway/server/ |
| H A D | psgs_reply.hpp | 105 int err_code, EDiagSev severity);
118 EDiagSev severity);
124 EDiagSev severity);
132 EDiagSev severity);
192 EDiagSev severity,
198 EDiagSev severity,
206 EDiagSev severity);
232 EDiagSev severity);
243 EDiagSev severity);
266 EDiagSev severity);
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| H A D | cass_blob_base.hpp | 67 EDiagSev severity, const string & message);
75 EDiagSev severity,
80 EDiagSev severity,
85 EDiagSev severity,
156 EDiagSev severity);
161 EDiagSev severity);
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| H A D | pubseq_gateway_utils.hpp | 149 EDiagSev severity);
165 EDiagSev severity);
181 EDiagSev severity);
202 EDiagSev severity,
227 EDiagSev severity);
242 EDiagSev severity);
255 EDiagSev severity);
263 EDiagSev severity);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | ncbidiag_p.hpp | 221 EDiagSev GetSeverity() const { return m_DiagSev; } in GetSeverity()
222 void SetSeverity(EDiagSev sev) { m_DiagSev = sev; } in SetSeverity()
233 EDiagSev m_DiagSev;
269 EDiagFilterAction x_CheckErrCode(int code, int subcode, EDiagSev sev) const;
272 EDiagFilterAction x_CheckFile(const char* file, EDiagSev sev) const;
278 EDiagSev sev) const;
385 EDiagSev x_GetDiagSeverity(const string& sev_str);
394 EDiagSev m_DiagSev;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | ncbidiag_p.hpp | 221 EDiagSev GetSeverity() const { return m_DiagSev; } in GetSeverity()
222 void SetSeverity(EDiagSev sev) { m_DiagSev = sev; } in SetSeverity()
233 EDiagSev m_DiagSev;
269 EDiagFilterAction x_CheckErrCode(int code, int subcode, EDiagSev sev) const;
272 EDiagFilterAction x_CheckFile(const char* file, EDiagSev sev) const;
278 EDiagSev sev) const;
385 EDiagSev x_GetDiagSeverity(const string& sev_str);
394 EDiagSev m_DiagSev;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/corelib/ |
| H A D | ncbidiag.hpp | 647 enum EDiagSev { enum
832 Severity(EDiagSev sev) in Severity()
1117 EDiagSev GetSeverity(void) const;
1340 void SetPrintSeverity(EDiagSev sev);
1366 EDiagSev m_PrintSev;
1367 EDiagSev m_CollectSev;
1449 extern EDiagSev SetDiagPostLevel(EDiagSev post_sev = eDiag_Error);
1456 extern EDiagSev GetDiagPostLevel(void);
1464 extern int CompareDiagPostLevel(EDiagSev sev1, EDiagSev sev2);
1489 extern EDiagSev SetDiagDieLevel(EDiagSev die_sev = eDiag_Fatal);
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| H A D | ncbi_message.hpp | 100 virtual EDiagSev GetSeverity(void) const = 0;
141 EDiagSev sev,
146 virtual EDiagSev GetSeverity(void) const;
155 EDiagSev m_Severity;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/corelib/ |
| H A D | ncbidiag.hpp | 647 enum EDiagSev { enum
832 Severity(EDiagSev sev) in Severity()
1117 EDiagSev GetSeverity(void) const;
1335 void SetPrintSeverity(EDiagSev sev);
1361 EDiagSev m_PrintSev;
1362 EDiagSev m_CollectSev;
1444 extern EDiagSev SetDiagPostLevel(EDiagSev post_sev = eDiag_Error);
1451 extern EDiagSev GetDiagPostLevel(void);
1459 extern int CompareDiagPostLevel(EDiagSev sev1, EDiagSev sev2);
1484 extern EDiagSev SetDiagDieLevel(EDiagSev die_sev = eDiag_Fatal);
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| H A D | ncbi_message.hpp | 100 virtual EDiagSev GetSeverity(void) const = 0;
141 EDiagSev sev,
146 virtual EDiagSev GetSeverity(void) const;
155 EDiagSev m_Severity;
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/readers/ |
| H A D | line_error.hpp | 370 virtual EDiagSev Severity(void) const { return eDiag_Error; } in Severity()
388 EDiagSev eSeverity,
423 virtual EDiagSev
459 EDiagSev m_eSeverity;
471 EDiagSev eSeverity,
499 EDiagSev eSeverity,
531 virtual EDiagSev
577 EDiagSev m_eSeverity;
591 EDiagSev eSeverity,
626 EDiagSev eSeverity,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/readers/ |
| H A D | line_error.hpp | 370 virtual EDiagSev Severity(void) const { return eDiag_Error; } in Severity()
388 EDiagSev eSeverity,
423 virtual EDiagSev
459 EDiagSev m_eSeverity;
471 EDiagSev eSeverity,
499 EDiagSev eSeverity,
531 virtual EDiagSev
577 EDiagSev m_eSeverity;
591 EDiagSev eSeverity,
626 EDiagSev eSeverity,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objtools/logging/ |
| H A D | message.hpp | 59 virtual EDiagSev GetSeverity(void) const = 0;
71 EDiagSev severity);
86 virtual EDiagSev GetSeverity(void) const;
92 EDiagSev m_Severity;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/logging/ |
| H A D | message.hpp | 59 virtual EDiagSev GetSeverity(void) const = 0;
71 EDiagSev severity);
86 virtual EDiagSev GetSeverity(void) const;
92 EDiagSev m_Severity;
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/valerr/ |
| H A D | ValidError.cpp | 59 (EDiagSev sev, in AddValidErrItem()
82 (EDiagSev sev, in AddValidErrItem()
106 (EDiagSev sev, in AddValidErrItem()
125 void CValidError::AddValidErrItem(EDiagSev sev, unsigned int ec, const string& msg) in AddValidErrItem()
204 EDiagSev minsev, in CValidError_CI()
205 EDiagSev maxsev) : in CValidError_CI()
273 EDiagSev item_sev = (*m_Current)->GetSeverity(); in Filter()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/valerr/ |
| H A D | ValidError.cpp | 59 (EDiagSev sev, in AddValidErrItem()
82 (EDiagSev sev, in AddValidErrItem()
106 (EDiagSev sev, in AddValidErrItem()
125 void CValidError::AddValidErrItem(EDiagSev sev, unsigned int ec, const string& msg) in AddValidErrItem()
204 EDiagSev minsev, in CValidError_CI()
205 EDiagSev maxsev) : in CValidError_CI()
273 EDiagSev item_sev = (*m_Current)->GetSeverity(); in Filter()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | aln_error_reporter.cpp | 67 EDiagSev::eDiag_Fatal, in Fatal()
96 EDiagSev::eDiag_Error, in Error()
113 EDiagSev::eDiag_Warning, in Warn()
124 EDiagSev severity, in Report()
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| H A D | line_error.cpp | 44 EDiagSev eSeverity, in BEGIN_SCOPE()
76 EDiagSev eSeverity, in CLineError()
105 EDiagSev eSeverity, in Create()
143 EDiagSev eSeverity, in CLineErrorEx()
195 EDiagSev eSeverity, in Create()
228 EDiagSev eSeverity, in CObjReaderLineException()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | aln_error_reporter.cpp | 67 EDiagSev::eDiag_Fatal, in Fatal()
96 EDiagSev::eDiag_Error, in Error()
113 EDiagSev::eDiag_Warning, in Warn()
124 EDiagSev severity, in Report()
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| H A D | line_error.cpp | 44 EDiagSev eSeverity, in BEGIN_SCOPE()
76 EDiagSev eSeverity, in CLineError()
105 EDiagSev eSeverity, in Create()
143 EDiagSev eSeverity, in CLineErrorEx()
195 EDiagSev eSeverity, in Create()
228 EDiagSev eSeverity, in CObjReaderLineException()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/serial/ |
| H A D | exception.hpp | 116 EDiagSev severity = eDiag_Error);
121 EDiagSev severity = eDiag_Error);
126 EDiagSev severity = eDiag_Error);
130 EDiagSev severity = eDiag_Error);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/serial/ |
| H A D | exception.hpp | 116 EDiagSev severity = eDiag_Error);
121 EDiagSev severity = eDiag_Error);
126 EDiagSev severity = eDiag_Error);
130 EDiagSev severity = eDiag_Error);
|