Searched refs:EResidue (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.cpp | 39 const EResidue k_toMinus[5] = { enT, enG, enC, enA, enN };
77 static const EResidue s_ecodons0 [3] = { enA, enT, enG };
78 static const EResidue s_ecodons1 [3] = { enT, enA, enA };
79 static const EResidue s_ecodons2 [3] = { enT, enA, enG };
80 static const EResidue s_ecodons3 [3] = { enT, enG, enA };
81 static const EResidue s_ecodons0r[3] = { enC, enA, enT };
82 static const EResidue s_ecodons1r[3] = { enT, enT, enA };
98 class res_traits<EResidue> {
100 static EResidue _fromACGT(TResidue x) in _fromACGT()
119 template bool IsStartCodon<EResidue>(const EResidue * seq, int strand);
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| H A D | gnomon_seq.hpp | 44 class CEResidueVec : public vector<EResidue> {};
61 inline EResidue fromACGT(TResidue c) in fromACGT()
83 inline TResidue toACGT(EResidue c) in toACGT()
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| H A D | hmm.hpp | 55 double& Score(const EResidue* seq) { return m_next[(int)*(seq-order)].Score(seq); } in Score()
56 … const double& Score(const EResidue* seq) const { return m_next[(int)*(seq-order)].Score(seq); } in Score()
73 double& Score(const EResidue* seq) { return m_score[(int)*seq]; } in Score()
74 const double& Score(const EResidue* seq) const { return m_score[(int)*seq]; } in Score()
89 double Score(const EResidue* seq) const;
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| H A D | score.hpp | 99 const EResidue* SeqPtr(int i, int strand) const;
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| H A D | gnomon_engine.cpp | 119 EResidue c = m_data->m_ds[ePlus][i]; in ResetRange()
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| H A D | hmm_inlines.hpp | 82 template<int order> double CMarkovChainArray<order>::Score(const EResidue* seq) const in Score()
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| H A D | parse.cpp | 563 const EResidue* seqp = m_seqscr.SeqPtr(0, ePlus); in GetGenes()
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| H A D | score.cpp | 108 const EResidue* CSeqScores::SeqPtr(int i, int strand) const in SeqPtr()
367 EResidue l = fromACGT(c); in Init()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 841 class EResidue { class
843 EResidue() : data(enN) {} in EResidue() function in EResidue
844 EResidue(EResidueNames e) : data(e) {} in EResidue() function in EResidue
877 extern const EResidue k_toMinus[5];
880 inline EResidue Complement(EResidue c) in Complement()
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