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Searched refs:EditedSequence (Results 1 – 7 of 7) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dgnomon_seq.cpp620 void CAlignMap::EditedSequence(const Vec& original_sequence, Vec& edited_sequence, bool includehole… in EditedSequence() function in CAlignMap
676 void CAlignMap::EditedSequence<CResidueVec>(const CResidueVec& original_sequence, CResidueVec& edit…
678 void CAlignMap::EditedSequence<CEResidueVec>(const CEResidueVec& original_sequence, CEResidueVec& e…
680 void CAlignMap::EditedSequence<string>(const string& original_sequence, string& edited_sequence, bo…
H A Dscore.cpp173 m_map.EditedSequence(original_sequence, sequence); in ConstructSequenceAndMaps()
443 mrnamap.EditedSequence(m_seq[ePlus], mRNA); in Init()
1395 mrnamap.EditedSequence(m_data->m_ds[ePlus], mrna); in GetScore()
H A Dannot.cpp734 mrnamap.EditedSequence(seq, vec); in transform_model()
H A Dgnomon_objmgr.cpp487 amap.EditedSequence(contig_sequence,mrna); in GetCdsDnaSequence()
H A Dasn1.cpp92 amap.EditedSequence(contig_seq, mrna_seq, true); in SModelData()
H A Dchainer.cpp5043 amap.EditedSequence(contig, mrna); in SetConfirmedEnds()
6316 amap.EditedSequence(contig, mrna); in FindSelenoproteinsClipProteinsToStartStop()
6671 cdsmap.EditedSequence(seq, cds); in transform_align()
8092 m_edited_contig_map.EditedSequence(seq,editedseq); in SetGenomic()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp654 …void EditedSequence(const Vec& original_sequence, Vec& edited_sequence, bool includeholes = false)…