Searched refs:ExonerateHelper (Results 1 – 4 of 4) sorted by relevance
63 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()66 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()69 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()72 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()75 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()78 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()82 assertTrue(GffHelperFactory.getHelper(gff.split(tabRegex)) instanceof ExonerateHelper); in testGetHelper()
66 ExonerateHelper in testGetMappingType()69 ExonerateHelper.getMappingType("exonerate:protein2dna:local")); in testGetMappingType()73 ExonerateHelper.getMappingType("coding2coding")); in testGetMappingType()75 ExonerateHelper.getMappingType("coding2genome")); in testGetMappingType()77 ExonerateHelper.getMappingType("cdna2genome")); in testGetMappingType()79 ExonerateHelper.getMappingType("genome2genome")); in testGetMappingType()80 assertNull(ExonerateHelper.getMappingType("affine:local")); in testGetMappingType()95 ExonerateHelper testee = new ExonerateHelper(); in testProcessGffSimilarity_protein2dna_forward_querygff()138 ExonerateHelper testee = new ExonerateHelper(); in testProcessGffSimilarity_protein2dna_reverse_querygff()181 ExonerateHelper testee = new ExonerateHelper(); in testProcessGffSimilarity_protein2dna_forward_targetgff()[all …]
45 if (ExonerateHelper.recognises(gff)) in getHelper()47 result = new ExonerateHelper(); in getHelper()
37 public class ExonerateHelper extends Gff2Helper class