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Searched refs:ExtractAlgorithmOptions (Results 1 – 11 of 11) sorted by relevance

/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/
H A Dblast_args.hpp102 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
120 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
211 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
230 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
244 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
258 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
271 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
911 virtual void ExtractAlgorithmOptions(const CArgs& args,
1109 virtual void ExtractAlgorithmOptions(const CArgs& args,
1366 virtual void ExtractAlgorithmOptions(const CArgs& args,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/
H A Dblast_args.hpp102 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
120 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
211 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
230 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
244 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
258 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
271 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args,
911 virtual void ExtractAlgorithmOptions(const CArgs& args,
1109 virtual void ExtractAlgorithmOptions(const CArgs& args,
1366 virtual void ExtractAlgorithmOptions(const CArgs& args,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/
H A Dblast_args.cpp1238 CPsiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPsiBlastArgs
1347 CPhiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPhiBlastArgs
1389 CKBlastpArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CKBlastpArgs
1473 CMappingArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMappingArgs
1697 CIgBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CIgBlastArgs
3244 CMbIndexArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMbIndexArgs
3497 (*arg)->ExtractAlgorithmOptions(args, opts); in SetOptions()
3679 m_QueryOptsArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
3681 m_RemoteArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
3682 m_DebugArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
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H A Dmagicblast_args.cpp204 virtual void ExtractAlgorithmOptions(const CArgs& args, CBlastOptions& /* opts */) { in ExtractAlgorithmOptions() function in CMapperMTArgs
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/
H A Dblast_args.cpp1238 CPsiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPsiBlastArgs
1347 CPhiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPhiBlastArgs
1389 CKBlastpArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CKBlastpArgs
1473 CMappingArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMappingArgs
1697 CIgBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CIgBlastArgs
3244 CMbIndexArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMbIndexArgs
3497 (*arg)->ExtractAlgorithmOptions(args, opts); in SetOptions()
3679 m_QueryOptsArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
3681 m_RemoteArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
3682 m_DebugArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy()
[all …]
H A Dmagicblast_args.cpp204 virtual void ExtractAlgorithmOptions(const CArgs& args, CBlastOptions& /* opts */) { in ExtractAlgorithmOptions() function in CMapperMTArgs
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/
H A Dblast_aligner.cpp127 search_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
128 filter_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
129 nucl_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
130 gapped_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
131 cull_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
132 window_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
133 format_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
134 remote_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/
H A Dblast_report.cpp266 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
269 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
H A Dblast_formatter.cpp340 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
343 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
535 debug_args.ExtractAlgorithmOptions(args, dummy_options); in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/
H A Dblast_report.cpp266 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
269 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
H A Dblast_formatter.cpp340 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
343 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
535 debug_args.ExtractAlgorithmOptions(args, dummy_options); in Run()