/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/blastinput/ |
H A D | blast_args.hpp | 102 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 120 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 211 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 230 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 244 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 258 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 271 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 911 virtual void ExtractAlgorithmOptions(const CArgs& args, 1109 virtual void ExtractAlgorithmOptions(const CArgs& args, 1366 virtual void ExtractAlgorithmOptions(const CArgs& args, [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/blastinput/ |
H A D | blast_args.hpp | 102 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 120 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 211 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 230 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 244 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 258 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 271 virtual void ExtractAlgorithmOptions(const CArgs& cmd_line_args, 911 virtual void ExtractAlgorithmOptions(const CArgs& args, 1109 virtual void ExtractAlgorithmOptions(const CArgs& args, 1366 virtual void ExtractAlgorithmOptions(const CArgs& args, [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
H A D | blast_args.cpp | 1238 CPsiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPsiBlastArgs 1347 CPhiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPhiBlastArgs 1389 CKBlastpArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CKBlastpArgs 1473 CMappingArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMappingArgs 1697 CIgBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CIgBlastArgs 3244 CMbIndexArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMbIndexArgs 3497 (*arg)->ExtractAlgorithmOptions(args, opts); in SetOptions() 3679 m_QueryOptsArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() 3681 m_RemoteArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() 3682 m_DebugArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() [all …]
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H A D | magicblast_args.cpp | 204 virtual void ExtractAlgorithmOptions(const CArgs& args, CBlastOptions& /* opts */) { in ExtractAlgorithmOptions() function in CMapperMTArgs
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
H A D | blast_args.cpp | 1238 CPsiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPsiBlastArgs 1347 CPhiBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CPhiBlastArgs 1389 CKBlastpArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CKBlastpArgs 1473 CMappingArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMappingArgs 1697 CIgBlastArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CIgBlastArgs 3244 CMbIndexArgs::ExtractAlgorithmOptions(const CArgs& args, in ExtractAlgorithmOptions() function in CMbIndexArgs 3497 (*arg)->ExtractAlgorithmOptions(args, opts); in SetOptions() 3679 m_QueryOptsArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() 3681 m_RemoteArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() 3682 m_DebugArgs->ExtractAlgorithmOptions(args, opts); in SetOptionsForSavedStrategy() [all …]
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H A D | magicblast_args.cpp | 204 virtual void ExtractAlgorithmOptions(const CArgs& args, CBlastOptions& /* opts */) { in ExtractAlgorithmOptions() function in CMapperMTArgs
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
H A D | blast_aligner.cpp | 127 search_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 128 filter_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 129 nucl_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 130 gapped_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 131 cull_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 132 window_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 133 format_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs() 134 remote_args.ExtractAlgorithmOptions(Args, Options->SetOptions()); in s_ExtractBlastArgs()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/ |
H A D | blast_report.cpp | 266 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 269 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
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H A D | blast_formatter.cpp | 340 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 343 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 535 debug_args.ExtractAlgorithmOptions(args, dummy_options); in Run()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/ |
H A D | blast_report.cpp | 266 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 269 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput()
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H A D | blast_formatter.cpp | 340 fmt_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 343 debug_args.ExtractAlgorithmOptions(args, opts); in PrintFormattedOutput() 535 debug_args.ExtractAlgorithmOptions(args, dummy_options); in Run()
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