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Searched refs:FCOUNT (Results 1 – 25 of 52) sorted by relevance

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/dports/lang/ferite/ferite-1.0.2/scripts/test-suite/
H A DMakefile.am30 @(FCOUNT=0; TCOUNT=0; for file in $(testscripts); do \
36 SOMEVALUE=$$((FCOUNT++)); \
39 done; echo ""; echo "Result: $$FCOUNT out of $$TCOUNT tests failed")
42 @(FCOUNT=0; TCOUNT=0; for file in $(testscripts); do \
48 SOMEVALUE=$$((FCOUNT++)); \
51 done; echo ""; echo "Result: $$FCOUNT out of $$TCOUNT tests failed")
/dports/biology/muscle/muscle-3.8.1551/
H A Dmsa2.cpp17 FCOUNT fcCounts[], FCOUNT *ptrfcGapStart, FCOUNT *ptrfcGapEnd, in GetFractionalWeightedCounts()
18 FCOUNT *ptrfcGapExtend, FCOUNT *ptrfOcc, in GetFractionalWeightedCounts()
19 FCOUNT *ptrfcLL, FCOUNT *ptrfcLG, FCOUNT *ptrfcGL, FCOUNT *ptrfcGG) const in GetFractionalWeightedCounts()
26 FCOUNT fGap = 0; in GetFractionalWeightedCounts()
53 const FCOUNT f = w/20; in GetFractionalWeightedCounts()
101 FCOUNT fcStartCount = 0; in GetFractionalWeightedCounts()
115 FCOUNT fcEndCount = 0; in GetFractionalWeightedCounts()
129 FCOUNT LL = 0; in GetFractionalWeightedCounts()
130 FCOUNT LG = 0; in GetFractionalWeightedCounts()
131 FCOUNT GL = 0; in GetFractionalWeightedCounts()
[all …]
H A Dglbalignle.cpp22 FCOUNT *OccA;
23 FCOUNT *OccB;
27 FCOUNT **FreqsA;
85 DPM.OccA = new FCOUNT[uLength]; in AllocDPMem()
86 DPM.OccB = new FCOUNT[uLength]; in AllocDPMem()
109 DPM.FreqsA[i] = new FCOUNT[20]; in AllocDPMem()
131 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignLE()
142 FCOUNT *OccA = DPM.OccA; in GlobalAlignLE()
143 FCOUNT *OccB = DPM.OccB; in GlobalAlignLE()
185 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignLE()
[all …]
H A Dprofile.h15 FCOUNT m_fcCounts[20];
16 FCOUNT m_LL;
17 FCOUNT m_LG;
18 FCOUNT m_GL;
19 FCOUNT m_GG;
22 FCOUNT m_fOcc;
23 FCOUNT m_fcStartOcc;
24 FCOUNT m_fcEndOcc;
73 bool IsHydrophilic(const FCOUNT fcCounts[]);
103 bool IsHydrophobic(const FCOUNT fcCounts[]);
H A Dprofilefrommsa.cpp7 static void LogF(FCOUNT f) in LogF()
73 FCOUNT f = PP.m_fcCounts[uLetter]; in ListProfile()
138 FCOUNT f = PP.m_fcCounts[uLetter]; in ListProfile()
156 void SortCounts(const FCOUNT fcCounts[], unsigned SortOrder[]) in SortCounts()
182 static unsigned AminoGroupFromFCounts(const FCOUNT fcCounts[]) in AminoGroupFromFCounts()
228 unsigned ResidueGroupFromFCounts(const FCOUNT fcCounts[]) in ResidueGroupFromFCounts()
260 FCOUNT fcGapStart; in ProfileFromMSA()
261 FCOUNT fcGapEnd; in ProfileFromMSA()
262 FCOUNT fcGapExtend; in ProfileFromMSA()
263 FCOUNT fOcc; in ProfileFromMSA()
[all …]
H A Dmsa.h43 FCOUNT fcCounts[], FCOUNT *ptrfcGapStart, FCOUNT *ptrfcGapEnd,
44 FCOUNT *fcGapExtend, FCOUNT *ptrfOcc,
45 FCOUNT *fcLL, FCOUNT *fcLG, FCOUNT *fcGL, FCOUNT *fcGG) const;
H A Dscorepp.cpp7 FCOUNT fcMostCommon = PP.m_fcCounts[0]; in ConsensusChar()
12 const FCOUNT fc = PP.m_fcCounts[uLetter]; in ConsensusChar()
39 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2LA()
56 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2NS()
70 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2SP()
84 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2SPN()
H A Dglbalignsp.cpp21 FCOUNT **FreqsA;
76 DPM.FreqsA = new FCOUNT*[uLength]; in AllocDPMem()
95 DPM.FreqsA[i] = new FCOUNT[20]; in AllocDPMem()
114 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignSP()
156 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignSP()
164 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSP()
168 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSP()
188 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSP()
192 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSP()
215 const FCOUNT *FreqsAi = *ptrFreqsA; in GlobalAlignSP()
[all …]
H A Dglbalignspn.cpp21 FCOUNT **FreqsA;
108 DPM.FreqsA = new FCOUNT*[uLength]; in AllocDPMem()
127 DPM.FreqsA[i] = new FCOUNT[4]; in AllocDPMem()
149 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignSPN()
191 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignSPN()
199 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSPN()
203 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSPN()
223 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSPN()
227 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSPN()
250 const FCOUNT *FreqsAi = *ptrFreqsA; in GlobalAlignSPN()
[all …]
H A Dtomhydro.cpp57 bool IsHydrophilic(const FCOUNT fcCounts[]) in IsHydrophilic()
65 static double HydrophilicFraction(const FCOUNT fcCounts[]) in HydrophilicFraction()
71 FCOUNT Freq = fcCounts[uLetter]; in HydrophilicFraction()
H A Dspfast.cpp91 static SCORE SPGapFreqs(const FCOUNT Freqs[]) in SPGapFreqs()
105 const FCOUNT fi = Freqs[i]; in SPGapFreqs()
141 static SCORE SPFreqs(const FCOUNT Freqs[]) in SPFreqs()
155 const FCOUNT fi = Freqs[i]; in SPFreqs()
193 FCOUNT Freqs[20]; in ObjScoreSPCol()
194 FCOUNT GapFreqs[4]; in ObjScoreSPCol()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/
H A Dmsa2.cpp22 FCOUNT fcCounts[], FCOUNT *ptrfcGapStart, FCOUNT *ptrfcGapEnd, in GetFractionalWeightedCounts()
23 FCOUNT *ptrfcGapExtend, FCOUNT *ptrfOcc, in GetFractionalWeightedCounts()
24 FCOUNT *ptrfcLL, FCOUNT *ptrfcLG, FCOUNT *ptrfcGL, FCOUNT *ptrfcGG, in GetFractionalWeightedCounts()
37 FCOUNT fGap = 0; in GetFractionalWeightedCounts()
64 const FCOUNT f = w/20; in GetFractionalWeightedCounts()
112 FCOUNT fcStartCount = 0; in GetFractionalWeightedCounts()
126 FCOUNT fcEndCount = 0; in GetFractionalWeightedCounts()
140 FCOUNT LL = 0; in GetFractionalWeightedCounts()
141 FCOUNT LG = 0; in GetFractionalWeightedCounts()
142 FCOUNT GL = 0; in GetFractionalWeightedCounts()
[all …]
H A Dprofile.h15 FCOUNT m_fcCounts[20];
16 FCOUNT m_LL;
17 FCOUNT m_LG;
18 FCOUNT m_GL;
19 FCOUNT m_GG;
22 FCOUNT m_fOcc;
23 FCOUNT m_fcStartOcc;
24 FCOUNT m_fcEndOcc;
80 bool IsHydrophilic(const FCOUNT fcCounts[]);
110 bool IsHydrophobic(const FCOUNT fcCounts[]);
H A Dglbalignle.cpp94 DPM.OccA = new FCOUNT[uLength]; in AllocDPMem()
95 DPM.OccB = new FCOUNT[uLength]; in AllocDPMem()
99 DPM.FreqsA = new FCOUNT*[uLength]; in AllocDPMem()
118 DPM.FreqsA[i] = new FCOUNT[20]; in AllocDPMem()
144 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignLE()
155 FCOUNT *OccA = DPM.OccA; in GlobalAlignLE()
156 FCOUNT *OccB = DPM.OccB; in GlobalAlignLE()
198 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignLE()
206 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignLE()
239 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignLE()
[all …]
H A Dprofilefrommsa.cpp11 static void LogF(FCOUNT f) in LogF()
81 FCOUNT f = PP.m_fcCounts[uLetter]; in ListProfile()
150 FCOUNT f = PP.m_fcCounts[uLetter]; in ListProfile()
194 static unsigned AminoGroupFromFCounts(const FCOUNT fcCounts[]) in AminoGroupFromFCounts()
217 static unsigned NucleoGroupFromFCounts(const FCOUNT fcCounts[]) in NucleoGroupFromFCounts()
240 unsigned ResidueGroupFromFCounts(const FCOUNT fcCounts[]) in ResidueGroupFromFCounts()
281 FCOUNT fcGapStart; in ProfileFromMSA()
282 FCOUNT fcGapEnd; in ProfileFromMSA()
283 FCOUNT fcGapExtend; in ProfileFromMSA()
284 FCOUNT fOcc; in ProfileFromMSA()
[all …]
H A Dmsa.h46 FCOUNT fcCounts[], FCOUNT *ptrfcGapStart, FCOUNT *ptrfcGapEnd,
47 FCOUNT *fcGapExtend, FCOUNT *ptrfOcc,
48 FCOUNT *fcLL, FCOUNT *fcLG, FCOUNT *fcGL, FCOUNT *fcGG,
H A Dscorepp.cpp16 FCOUNT fcMostCommon = PP.m_fcCounts[0]; in ConsensusChar()
21 const FCOUNT fc = PP.m_fcCounts[uLetter]; in ConsensusChar()
48 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2LA()
65 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2NS()
79 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2SP()
93 const FCOUNT fcLetter = PPA.m_fcCounts[uLetter]; in ScoreProfPos2SPN()
H A Dglbalignsp.cpp85 DPM.FreqsA = new FCOUNT*[uLength]; in AllocDPMem()
104 DPM.FreqsA[i] = new FCOUNT[20]; in AllocDPMem()
127 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignSP()
169 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignSP()
177 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSP()
181 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSP()
201 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSP()
205 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSP()
228 const FCOUNT *FreqsAi = *ptrFreqsA; in GlobalAlignSP()
239 const FCOUNT fcLetter = FreqsAi[uLetter]; in GlobalAlignSP()
H A Dglbalignspn.cpp121 DPM.FreqsA = new FCOUNT*[uLength]; in AllocDPMem()
140 DPM.FreqsA[i] = new FCOUNT[4]; in AllocDPMem()
167 FCOUNT **FreqsA = DPM.FreqsA; in GlobalAlignSPN()
209 FCOUNT **ptrFreqsA = FreqsA; in GlobalAlignSPN()
217 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSPN()
221 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSPN()
241 FCOUNT *ptrFreqsAi = FreqsA[0]; in GlobalAlignSPN()
245 const FCOUNT fcLetter = ptrFreqsAi[uLetter]; in GlobalAlignSPN()
268 const FCOUNT *FreqsAi = *ptrFreqsA; in GlobalAlignSPN()
279 const FCOUNT fcLetter = FreqsAi[uLetter]; in GlobalAlignSPN()
H A Dtomhydro.cpp58 bool IsHydrophilic(const FCOUNT fcCounts[]) in IsHydrophilic()
66 static double HydrophilicFraction(const FCOUNT fcCounts[]) in HydrophilicFraction()
72 FCOUNT Freq = fcCounts[uLetter]; in HydrophilicFraction()
H A Dspfast.cpp97 static SCORE SPGapFreqs(const FCOUNT Freqs[]) in SPGapFreqs()
113 const FCOUNT fi = Freqs[i]; in SPGapFreqs()
149 static SCORE SPFreqs(const FCOUNT Freqs[]) in SPFreqs()
165 const FCOUNT fi = Freqs[i]; in SPFreqs()
207 FCOUNT Freqs[20]; in ObjScoreSPCol()
208 FCOUNT GapFreqs[4]; in ObjScoreSPCol()
H A Dmuscle_context.h284 FCOUNT **FreqsA;
307 FCOUNT **FreqsA;
349 FCOUNT *OccA;
350 FCOUNT *OccB;
354 FCOUNT **FreqsA;
H A Daligngivenpath.cpp72 FCOUNT s1 = PP.m_LL + PP.m_LG + PP.m_GL + PP.m_GG; in ValidateProf()
78 FCOUNT s2 = PPPrev.m_LL + PPPrev.m_GL; in ValidateProf()
79 FCOUNT s3 = PP.m_LL + PP.m_LG; in ValidateProf()
85 FCOUNT s4 = PP.m_LL + PP.m_GL; in ValidateProf()
86 FCOUNT s5 = PPNext.m_LL + PPNext.m_LG; in ValidateProf()
115 FCOUNT fcOpen = PP.m_LG; in ScoresFromFreqsPos()
120 FCOUNT fcClose; in ScoresFromFreqsPos()
637 const FCOUNT fA = PPA.m_fOcc*wA/(wA + wB); in SetFreqs()
638 const FCOUNT fB = PPB.m_fOcc*wB/(wA + wB); in SetFreqs()
639 FCOUNT fTotal = 0; in SetFreqs()
[all …]
/dports/science/kst2/kst-plot-38eddb5322a1d557f9d86ea95d456d76272941e3/old_tests/dirfile_maker/
H A Ddirfile_maker.c16 #define FCOUNT 1 macro
71 for (i=0; i<df[FCOUNT].spf; i++) { in main()
72 x = count*df[FCOUNT].spf+i; in main()
73 write(df[FCOUNT].fp, &x, sizeof(float)); in main()
/dports/science/kst2/kst-plot-38eddb5322a1d557f9d86ea95d456d76272941e3/tests/dirfile_maker/
H A Ddirfile_maker.c20 #define FCOUNT 1 macro
116 for (i=0; i<df[FCOUNT].spf; i++) { in main()
117 x = count*df[FCOUNT].spf+i; in main()
118 nw = write(df[FCOUNT].fp, &x, sizeof(float)); in main()

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