Searched refs:FILE_TYPE_GTF (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/subread/subread-2.0.2-source/src/ |
| H A D | detection-calls.c | 432 ret -> anno_file_format = FILE_TYPE_GTF; in DTCinit_context()
469 ret -> anno_file_format = FILE_TYPE_GTF; in DTCinit_context()
|
| H A D | input-files.h | 58 #define FILE_TYPE_GTF 100 macro
|
| H A D | flattenAnnotations.c | 284 …int loaded_features = load_features_annotation(context -> GTF_file_name, FILE_TYPE_GTF, context ->… in flatAnno_do_anno()
|
| H A D | core-interface-aligner.c | 360 global_context->config.exon_annotation_file_type = FILE_TYPE_GTF; in parse_opts_aligner()
|
| H A D | core-interface-subjunc.c | 360 global_context->config.exon_annotation_file_type = FILE_TYPE_GTF; in parse_opts_subjunc()
|
| H A D | tx-unique.c | 83 …int loaded_features = load_features_annotation(context -> input_GTF_file_name, FILE_TYPE_GTF, cont… in txunique_load_annotation()
|
| H A D | readSummary.c | 1019 if(file_type == FILE_TYPE_GTF) in load_feature_info()
1199 } else if(file_type == FILE_TYPE_GTF) { in load_feature_info()
1360 … 'isGTFAnnotationFile' option%s.\n", file_type == FILE_TYPE_GTF?"GTF":"SAF", file_type == FILE_TYP… in load_feature_info()
1362 … specified by the '-F' option%s.\n", file_type == FILE_TYPE_GTF?"GTF":"SAF", file_type == FILE_TYP… in load_feature_info()
8569 …nexons = load_feature_info(&global_context,argv[1], isGTF?FILE_TYPE_GTF:FILE_TYPE_RSUBREAD, &loade… in readSummary()
|
| H A D | HelperFunctions.c | 1128 } else if(file_type == FILE_TYPE_GTF) { in load_features_annotation()
|
| H A D | core-indel.c | 4514 context->config.exon_annotation_file_type = FILE_TYPE_GTF; in init_global_context()
|
| H A D | core.c | 3813 …onfig.exon_annotation_file), context->config.exon_annotation_file_type==FILE_TYPE_GTF?"GTF":"SAF");
|
| H A D | input-files.c | 6441 return tabs < ((file_type == FILE_TYPE_GTF)?8:4); in is_comment_line()
|