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Searched refs:FLAGLONG (Results 1 – 25 of 48) sorted by relevance

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/dports/biology/lamarc/lamarc-2.1.8/src/datalike/
H A Dtipdata.cpp32 individual(FLAGLONG), in TipData()
33 m_locus(FLAGLONG), in TipData()
34 m_hap(FLAGLONG), in TipData()
48 individual = FLAGLONG; in Clear()
49 m_locus = FLAGLONG; in Clear()
50 m_hap = FLAGLONG; in Clear()
97 LongVec1d parts(partitions.size(),FLAGLONG); in GetBranchPartitions()
H A Ddlcalc.cpp75 long firstmrkr = FLAGLONG; in SitePairToMarkerPair()
76 long lastmrkr = FLAGLONG; in SitePairToMarkerPair()
89 return(rangepair(FLAGLONG, FLAGLONG)); in SitePairToMarkerPair()
97 return(rangepair(FLAGLONG,FLAGLONG)); in SitePairToMarkerPair()
119 assert(firstmrkr != FLAGLONG && lastmrkr != FLAGLONG); in SitePairToMarkerPair()
556 if (marker.first == FLAGLONG) continue; in Calculate()
812 if (marker.first != FLAGLONG) in Calculate()
932 if (marker.first != FLAGLONG) in SumNoPanel()
944 if (marker.first != FLAGLONG) in SumNoPanel()
1094 if (marker.first != FLAGLONG) in SumPanel()
[all …]
H A Dlocus.cpp38 m_nmarkers(FLAGLONG), in Locus()
39 m_nsites(FLAGLONG), in Locus()
58 m_truesite(FLAGLONG), in Locus()
86 if (m_nsites == FLAGLONG) return m_nmarkers; in GetNsites()
229 if (m_nmarkers == FLAGLONG) in SetNmarkers()
645 return FLAGLONG; in SiteToMarker()
876 if (m_truesite != FLAGLONG) in ReportMappingInfo()
1079 return FLAGLONG; in ChooseVariableSiteFrom()
H A Dphenotypes.cpp43 : m_regionnum(FLAGLONG), in Phenotypes()
52 assert (m_regionnum != FLAGLONG); in AddPhenotype()
H A Dlocuscell.cpp83 if (dlcells[cell]->DiffersFrom(src.dlcells[cell]) != FLAGLONG) in operator ==()
H A Dhaplotypes.cpp37 m_current_hapindex(FLAGLONG) in Haplotypes()
50 m_current_hapindex(FLAGLONG) in Haplotypes()
/dports/biology/lamarc/lamarc-2.1.8/src/control/
H A Dchainout.cpp18 : m_badtrees(FLAGLONG), in ChainOut()
19 m_tinypoptrees(FLAGLONG), in ChainOut()
20 m_zerodltrees(FLAGLONG), in ChainOut()
21 m_stretchedtrees(FLAGLONG), in ChainOut()
23 m_numtemps(FLAGLONG), in ChainOut()
H A Dchainpack.cpp233 chout.SetNumBadTrees(FLAGLONG); in SetSummaryOverReps()
234 chout.SetNumTinyPopTrees(FLAGLONG); in SetSummaryOverReps()
235 chout.SetNumStretchedTrees(FLAGLONG); in SetSummaryOverReps()
236 chout.SetNumZeroDLTrees(FLAGLONG); in SetSummaryOverReps()
262 chout.SetNumBadTrees(FLAGLONG); in SetSummaryOverRegions()
263 chout.SetNumTinyPopTrees(FLAGLONG); in SetSummaryOverRegions()
264 chout.SetNumStretchedTrees(FLAGLONG); in SetSummaryOverRegions()
265 chout.SetNumZeroDLTrees(FLAGLONG); in SetSummaryOverRegions()
/dports/biology/lamarc/lamarc-2.1.8/src/force/
H A Devent.cpp115 m_chosenxpart(FLAGLONG), in CoalEvent()
274 m_frompop(FLAGLONG), in MigEvent()
275 m_topop(FLAGLONG) in MigEvent()
368 m_topop = FLAGLONG; in PickTime()
409 m_frompop(FLAGLONG), in DivMigEvent()
410 m_topop(FLAGLONG) in DivMigEvent()
526 m_topop = FLAGLONG; in PickTime()
564 m_startdis(FLAGLONG), in DiseaseEvent()
565 m_enddis(FLAGLONG) in DiseaseEvent()
866 m_pindex = FLAGLONG; in EpochEvent()
[all …]
H A Dparamstat.cpp28 if (groupindex != FLAGLONG) return "be held at zero and ignored in output)"; in ConstraintDescription()
36 if (groupindex != FLAGLONG) in ConstraintDescription()
50 if (groupindex != FLAGLONG) return "stay at the same constant value)"; in ConstraintDescription()
H A Dtimemanager.cpp218 targetxpart = FLAGLONG; in TimeOfActiveCoal()
268 targetxpart = FLAGLONG; in TimeOfInactiveCoal()
329 tiptrait = FLAGLONG; in TimeOfTraitMutation()
330 roottrait = FLAGLONG; in TimeOfTraitMutation()
445 targetxpart = FLAGLONG; in TimeOfActiveCoal()
1611 targetxpart = FLAGLONG; in TimeOfActiveCoal()
1708 targetxpart = FLAGLONG; in TimeOfInactiveCoal()
1738 tiptrait = FLAGLONG; in TimeOfTraitMutation()
1739 roottrait = FLAGLONG; in TimeOfTraitMutation()
1855 tiptrait = FLAGLONG; in TimeOfTraitMutation()
[all …]
H A Dforceparam.cpp45 : m_region(FLAGLONG), in ForceParameters()
57 : m_region(FLAGLONG), in ForceParameters()
607 if (m_region == FLAGLONG) in FillRegionalParamsFromGlobalParams()
626 if (m_region == FLAGLONG) in FillGlobalParamsFromRegionalParams()
/dports/biology/lamarc/lamarc-2.1.8/src/bayeslike/
H A Dbayesanalyzer_1d.cpp491 if (!((region == FLAGLONG) && (m_regioncurves.size() == 1))) in CalcProfiles()
504 if (region==FLAGLONG) in CalcProfiles()
521 if (nregion == FLAGLONG) in CalcProfile()
639 if (region == FLAGLONG) in GetMinParamValFromCurve()
652 if (region == FLAGLONG) in GetMaxParamValFromCurve()
665 if (region == FLAGLONG) in GetBinWidthFromCurve()
706 if (region==FLAGLONG) in WriteCurvesForRegion()
718 if (region==FLAGLONG) in WriteCurvesForRegion()
743 if (region==FLAGLONG) in WriteCurvesForRegion()
749 if ((region != m_currentRegion-1) && (region != FLAGLONG)) in WriteCurvesForRegion()
[all …]
/dports/biology/lamarc/lamarc-2.1.8/src/tree/
H A Dbranch.cpp90 m_partitions(registry.GetDataPack().GetNPartitionForces(), FLAGLONG), in Branch()
544 if (badmarker == FLAGLONG) continue; in DLCheck()
1208 FLAGLONG, myxpart, FLAGLONG, FLAGLONG, emptyvec, force_COAL); in ScoreEvent()
1235 s, myxpart, FLAGLONG, FLAGLONG, emptyvec, force_COAL); in ScoreEvent()
1482 FLAGLONG, mypop, chpop, FLAGLONG, emptyvec, force_MIG); in ScoreEvent()
1509 s, mypop, chpop, FLAGLONG, emptyvec, force_MIG); in ScoreEvent()
1568 FLAGLONG, mypop, chpop, FLAGLONG, emptyvec, force_DIVMIG); in ScoreEvent()
1595 s, mypop, chpop, FLAGLONG, emptyvec, force_DIVMIG); in ScoreEvent()
1654 FLAGLONG, mydis, chdis, FLAGLONG, emptyvec, force_DISEASE); in ScoreEvent()
1724 FLAGLONG, mypop, chpop, FLAGLONG, emptyvec, force_DIVERGENCE); in ScoreEvent()
[all …]
H A Dsummary.cpp208 … m_fakeIntervals.AddDummyInterval(fakeback, 0L, param, FLAGLONG, FLAGLONG, force_COAL); in AdjustSummary()
315 … m_fakeIntervals.AddDummyInterval(fakeback, 0L, frompop, topop, FLAGLONG, force_MIG); in AdjustSummary()
419 … m_fakeIntervals.AddDummyInterval(fakeback, 0L, oldstatus, newstatus, FLAGLONG, force_DISEASE); in AdjustSummary()
557 m_fakeIntervals.AddDummyInterval(fakeback, 0L, FLAGLONG, FLAGLONG, 0L, force_REC); in AdjustSummary()
H A Drange.h96 virtual long int GetFirstTargetLink_Rg() const { assert(false); return FLAGLONG; }; in GetFirstTargetLink_Rg()
97 virtual long int NumTargetLinks_Rg() const { assert(false); return FLAGLONG; }; in NumTargetLinks_Rg()
99 virtual long int NumNewTargetLinks_Rg() const { assert(false); return FLAGLONG; }; in NumNewTargetLinks_Rg()
/dports/biology/recombine/recombine1.41/
H A Dgetdata.c85 return(FLAGLONG); in getdata_numpop()
89 return(FLAGLONG); in getdata_numpop()
113 return(FLAGLONG); in getdata_numloci()
117 return(FLAGLONG); in getdata_numloci()
141 return(FLAGLONG); in getdata_nummarkers()
145 return(FLAGLONG); in getdata_nummarkers()
173 return(FLAGLONG); in getdata_numseq()
204 return(FLAGLONG); in getdata_numtips()
231 return(FLAGLONG); in getdata_sitecount()
258 return(FLAGLONG); in getdata_markersite()
[all …]
H A Dconstants.h147 #define FLAGLONG -99L /* a arbitrary special value */ macro
H A Drecombine.c494 return(FLAGLONG); in findlink()
1794 op->thlb = FLAGLONG; in initoptions()
1795 op->thub = FLAGLONG; in initoptions()
1796 op->reclb = FLAGLONG; in initoptions()
1797 op->recub = FLAGLONG; in initoptions()
2510 p->number = FLAGLONG; in allocate_nodelet()
4249 snpsmooth(op,data,curtree,substart,FLAGLONG,FLAGLONG); in localeval()
4524 sranges[j+1] = FLAGLONG; in finddnasubtrees()
4643 return(FLAGLONG); in sitetorightmarker()
4665 return(FLAGLONG); in sitetomarker()
[all …]
H A Djdrop.c71 return(FLAGLONG); in countsites()
450 return((double)FLAGLONG); in getnumlinks()
663 if (cutmarker == FLAGLONG) return; in edit_alias()
712 (*newranges)[3] = FLAGLONG; in contrib()
735 (*newranges)[i+2] = FLAGLONG; in contrib()
872 return((p->futileflag == FLAGLONG)); in is_futile()
2945 if (newstart == FLAGLONG) { in updatesegranges()
2977 if (oval == FLAGLONG) in updatesegranges()
2985 if (nval == FLAGLONG) in updatesegranges()
3040 if(newstart != FLAGLONG && newend != FLAGLONG) { in segranges_to_ranges()
[all …]
/dports/biology/lamarc/lamarc-2.1.8/src/report/
H A Drunreport.cpp419 (zerodltrees == 0 || zerodltrees == FLAGLONG) && in FormatReport()
420 (stretchedtrees == 0 || stretchedtrees == FLAGLONG)) in FormatReport()
428 if (badtrees == FLAGLONG) in FormatReport()
439 if (tinytrees == FLAGLONG) in FormatReport()
450 if (zerodltrees == FLAGLONG) in FormatReport()
461 if (stretchedtrees == FLAGLONG) in FormatReport()
H A Dcurvefiles.cpp75 double minIndex = ba.GetMinParamValFromCurve(FLAGLONG, paramnum); in getMinIndex()
91 double maxIndex = ba.GetMaxParamValFromCurve(FLAGLONG, paramnum); in getMaxIndex()
107 double increment = ba.GetBinWidthFromCurve(FLAGLONG, paramnum); in getIncrement()
/dports/biology/lamarc/lamarc-2.1.8/src/ui_vars/
H A Dui_vars_forces.cpp330 if (gindex != FLAGLONG) in SetDoProfile()
361 if (gindex != FLAGLONG) in GetParamstatus()
386 if (gindex == FLAGLONG) in SetParamstatus()
399 if (gindex == FLAGLONG) in GetStartValue()
591 if (gindex != FLAGLONG) in SetUserStartValue()
700 if (gindex == FLAGLONG) in SetPriorType()
725 if (gindex == FLAGLONG) in SetRelativeSampling()
753 if (gindex == FLAGLONG) in SetLowerBound()
972 if (gnum != FLAGLONG) in RemoveParamIfInAGroup()
1041 return FLAGLONG; in ParamInGroup()
[all …]
/dports/biology/lamarc/lamarc-2.1.8/src/ui_interface/
H A Dconstraint_interface.cpp168 if (gindex == FLAGLONG) in Get()
198 if (gindex != FLAGLONG) in Get()
/dports/biology/lamarc/lamarc-2.1.8/src/lamarcmenus/
H A Dconstraintmenus.cpp307 return UIId(FLAGLONG); in GetGroupIdFromLocalId()
370 if (groupId.GetIndex1() != FLAGLONG) in GetHandler()

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