/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | version.c | 77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2() 78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode() 89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode() 90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
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H A D | bcftools.h | 35 #define FT_VCF 2 macro 36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/bcftools/bcftools-1.14/ |
H A D | version.c | 77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2() 78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode() 89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode() 90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
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H A D | bcftools.h | 35 #define FT_VCF 2 macro 36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | version.c | 77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2() 78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode() 89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode() 90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
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H A D | version.c.pysam.c | 79 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2() 80 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 81 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2() 90 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode() 91 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode() 92 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
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H A D | bcftools.h | 35 #define FT_VCF 2 macro 36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/bcftools/bcftools-1.14/plugins/ |
H A D | isecGT.c | 77 args->output_type = FT_VCF; in run() 101 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | remove-overlaps.c | 157 args->output_type = FT_VCF; in run() 198 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | prune.c | 282 args->output_type = FT_VCF; in run() 410 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | scatter.c | 305 args->output_type = FT_VCF; in run() 347 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | gvcfz.c | 314 args->output_type = FT_VCF; in run() 348 case 'v': args->output_type = FT_VCF; break; in run()
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/dports/biology/bio-mocha/bcftools-1.14/plugins/ |
H A D | isecGT.c | 77 args->output_type = FT_VCF; in run() 101 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | remove-overlaps.c | 157 args->output_type = FT_VCF; in run() 198 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | scatter.c | 305 args->output_type = FT_VCF; in run() 347 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | prune.c | 282 args->output_type = FT_VCF; in run() 410 case 'v': args->output_type = FT_VCF; break; in run()
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H A D | extendFMT.c | 311 int output_type = FT_VCF; in run() 367 output_type = FT_VCF; in run()
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H A D | gvcfz.c | 314 args->output_type = FT_VCF; in run() 348 case 'v': args->output_type = FT_VCF; break; in run()
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/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | hts.h | 389 #define FT_VCF 2 macro 390 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
H A D | hts.h | 646 #define FT_VCF 2 macro 647 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
H A D | hts.h | 699 #define FT_VCF 2 macro 700 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
H A D | hts.h | 711 #define FT_VCF 2 macro 712 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/stacks/stacks-2.4/htslib/htslib/ |
H A D | hts.h | 697 #define FT_VCF 2 macro 698 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
H A D | hts.h | 1225 #define FT_VCF 2 macro 1226 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
H A D | hts.h | 1350 #define FT_VCF 2 macro 1351 #define FT_VCF_GZ (FT_GZ|FT_VCF)
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