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Searched refs:FT_VCF (Results 1 – 25 of 97) sorted by relevance

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/dports/biology/bio-mocha/bcftools-1.14/
H A Dversion.c77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2()
78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode()
89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
H A Dbcftools.h35 #define FT_VCF 2 macro
36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/bcftools/bcftools-1.14/
H A Dversion.c77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2()
78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode()
89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
H A Dbcftools.h35 #define FT_VCF 2 macro
36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dversion.c77 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2()
78 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
79 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
88 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode()
89 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
90 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
H A Dversion.c.pysam.c79 if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) return hts_bcf_wmode(FT_VCF); in hts_bcf_wmode2()
80 if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
81 if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) return hts_bcf_wmode(FT_VCF|FT_GZ); in hts_bcf_wmode2()
90 else if ( len >= 4 && !strcasecmp(".vcf",fname+len-4) ) ret = hts_bcf_wmode(FT_VCF); in set_wmode()
91 else if ( len >= 7 && !strcasecmp(".vcf.gz",fname+len-7) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
92 else if ( len >= 8 && !strcasecmp(".vcf.bgz",fname+len-8) ) ret = hts_bcf_wmode(FT_VCF|FT_GZ); in set_wmode()
H A Dbcftools.h35 #define FT_VCF 2 macro
36 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/bcftools/bcftools-1.14/plugins/
H A DisecGT.c77 args->output_type = FT_VCF; in run()
101 case 'v': args->output_type = FT_VCF; break; in run()
H A Dremove-overlaps.c157 args->output_type = FT_VCF; in run()
198 case 'v': args->output_type = FT_VCF; break; in run()
H A Dprune.c282 args->output_type = FT_VCF; in run()
410 case 'v': args->output_type = FT_VCF; break; in run()
H A Dscatter.c305 args->output_type = FT_VCF; in run()
347 case 'v': args->output_type = FT_VCF; break; in run()
H A Dgvcfz.c314 args->output_type = FT_VCF; in run()
348 case 'v': args->output_type = FT_VCF; break; in run()
/dports/biology/bio-mocha/bcftools-1.14/plugins/
H A DisecGT.c77 args->output_type = FT_VCF; in run()
101 case 'v': args->output_type = FT_VCF; break; in run()
H A Dremove-overlaps.c157 args->output_type = FT_VCF; in run()
198 case 'v': args->output_type = FT_VCF; break; in run()
H A Dscatter.c305 args->output_type = FT_VCF; in run()
347 case 'v': args->output_type = FT_VCF; break; in run()
H A Dprune.c282 args->output_type = FT_VCF; in run()
410 case 'v': args->output_type = FT_VCF; break; in run()
H A DextendFMT.c311 int output_type = FT_VCF; in run()
367 output_type = FT_VCF; in run()
H A Dgvcfz.c314 args->output_type = FT_VCF; in run()
348 case 'v': args->output_type = FT_VCF; break; in run()
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dhts.h389 #define FT_VCF 2 macro
390 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/
H A Dhts.h646 #define FT_VCF 2 macro
647 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/vt/vt-0.57721/lib/htslib/htslib/
H A Dhts.h699 #define FT_VCF 2 macro
700 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/
H A Dhts.h711 #define FT_VCF 2 macro
712 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/stacks/stacks-2.4/htslib/htslib/
H A Dhts.h697 #define FT_VCF 2 macro
698 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/
H A Dhts.h1225 #define FT_VCF 2 macro
1226 #define FT_VCF_GZ (FT_GZ|FT_VCF)
/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/
H A Dhts.h1350 #define FT_VCF 2 macro
1351 #define FT_VCF_GZ (FT_GZ|FT_VCF)

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