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Searched refs:FibreDir (Results 1 – 12 of 12) sorted by relevance

/dports/biology/seqan1/seqan-1.3.1/seqan/index/
H A Dindex_qgram.h110 typedef Tag<FibreDir_> const FibreDir; typedef
123 typedef FibreDir QGramDir;
293 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
294 getFibre(Index<TText, TSpec> &index, FibreDir) {
299 getFibre(Index<TText, TSpec> const &index, FibreDir) {
360 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
362 return getFibre(index, FibreDir());
367 return getFibre(index, FibreDir());
386 return value(getFibre(index, FibreDir()), i);
391 return value(getFibre(index, FibreDir()), i);
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H A Dindex_generated_forwards.h1116 typedef Tag<FibreDir_> const FibreDir; // "seqan-1.3.1/seqan/index/index_qgram.h"(110) typedef
1281 typedef FibreDir QGramDir; // "seqan-1.3.1/seqan/index/index_qgram.h"(123)
1361 typedef FibreDir WotdDir; // "seqan-1.3.1/seqan/index/index_wotd.h"(76)
2460 template <typename TPos, typename TIndex> inline typename Reference<typename Fibre<TIndex, FibreDir…
2461 …typename TIndex> inline typename Reference<typename Fibre<TIndex const, FibreDir>::Type>::Type dir…
2562 …> inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type & getFibre(Index<TText, TSpec> &index…
2563 …typename Fibre<Index<TText, TSpec> const, FibreDir>::Type & getFibre(Index<TText, TSpec> const &in…
2812 … bool indexCreate( Index<TText, IndexQGram<TShapeSpec, TSpec> > &index, FibreDir, Default const); …
2825 template <typename TText, typename TSpec> inline typename Fibre<Index<TText, TSpec>, FibreDir>::Typ…
2826 template <typename TText, typename TSpec> inline typename Fibre<Index<TText, TSpec> const, FibreDir…
H A Dindex_wotd.h76 typedef FibreDir WotdDir;
205 struct DefaultIndexCreator<Index<TText, IndexWotd<TSpec> >, FibreDir> {
210 struct DefaultIndexCreator<Index<StringSet<TText, TSSetSpec>, IndexWotd<TSpec> >, FibreDir> {
/dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/
H A Dindex_qgram.h145 typedef Tag<FibreDir_> const FibreDir; typedef
158 typedef FibreDir QGramDir;
354 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
355 getFibre(Index<TText, TSpec> &index, FibreDir) {
360 getFibre(Index<TText, TSpec> const &index, FibreDir) {
450 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
452 return getFibre(index, FibreDir());
457 return getFibre(index, FibreDir());
477 return value(getFibre(index, FibreDir()), i);
482 return value(getFibre(index, FibreDir()), i);
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H A Dindex_qgram_bucketrefinement.h260 struct Fibre<Index<TText, IndexQGram<TShapeSpec, BucketRefinement> >, FibreDir>:
261 public Fibre<Index<TText, IndexQGram<TShapeSpec> >, FibreDir>
H A Dindex_wotd.h129 typedef FibreDir WotdDir;
286 struct DefaultIndexCreator<Index<TText, IndexWotd<TSpec> >, FibreDir> {
291 struct DefaultIndexCreator<Index<StringSet<TText, TSSetSpec>, IndexWotd<TSpec> >, FibreDir> {
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/
H A Dindex_qgram.h145 typedef Tag<FibreDir_> const FibreDir; typedef
158 typedef FibreDir QGramDir;
354 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
355 getFibre(Index<TText, TSpec> &index, FibreDir) {
360 getFibre(Index<TText, TSpec> const &index, FibreDir) {
450 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
452 return getFibre(index, FibreDir());
457 return getFibre(index, FibreDir());
477 return value(getFibre(index, FibreDir()), i);
482 return value(getFibre(index, FibreDir()), i);
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H A Dindex_qgram_bucketrefinement.h260 struct Fibre<Index<TText, IndexQGram<TShapeSpec, BucketRefinement> >, FibreDir>:
261 public Fibre<Index<TText, IndexQGram<TShapeSpec> >, FibreDir>
H A Dindex_wotd.h129 typedef FibreDir WotdDir;
286 struct DefaultIndexCreator<Index<TText, IndexWotd<TSpec> >, FibreDir> {
291 struct DefaultIndexCreator<Index<StringSet<TText, TSSetSpec>, IndexWotd<TSpec> >, FibreDir> {
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/
H A Dindex_qgram.h145 typedef Tag<FibreDir_> const FibreDir; typedef
158 typedef FibreDir QGramDir;
347 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
348 getFibre(Index<TText, TSpec> &index, FibreDir) {
353 getFibre(Index<TText, TSpec> const &index, FibreDir) {
443 inline typename Fibre<Index<TText, TSpec>, FibreDir>::Type &
445 return getFibre(index, FibreDir());
450 return getFibre(index, FibreDir());
470 return value(getFibre(index, FibreDir()), i);
475 return value(getFibre(index, FibreDir()), i);
[all …]
H A Dindex_qgram_bucketrefinement.h260 struct Fibre<Index<TText, IndexQGram<TShapeSpec, BucketRefinement> >, FibreDir>:
261 public Fibre<Index<TText, IndexQGram<TShapeSpec> >, FibreDir>
H A Dindex_wotd.h129 typedef FibreDir WotdDir;
274 struct DefaultIndexCreator<Index<TText, IndexWotd<TSpec> >, FibreDir> {
279 struct DefaultIndexCreator<Index<StringSet<TText, TSSetSpec>, IndexWotd<TSpec> >, FibreDir> {