| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Apps/ |
| H A D | meta-velvetg.cc | 36 …MetaGraph* graph = new MetaGraph( FileNameUtils::getSeqFileName(prefix), FileNameUtils::getInitial… in loadGraph()
56 …judge->setStatsWriter( FileNameUtils::getSplitStatsFileName(prefix), FileNameUtils::getSplitDetail… in setSplitJudge()
74 metaGraph->saveStats( FileNameUtils::getHistoStatsFileName(prefix) ); in estimateExpectedCoverages()
126 FileNameUtils::getLowCoverageContigsFileName(prefix), in removeNodes()
127 FileNameUtils::getHighCoverageContigsFileName(prefix) ); in removeNodes()
140 metaGraph->saveStats( FileNameUtils::getStatsFileName(prefix) ); in output()
141 metaGraph->save( FileNameUtils::getLastGraphFileName(prefix) ); in output()
142 …ignments ){ metaGraph->saveAlignments( FileNameUtils::getAlignmentFileName(prefix), minContigLengt… in output()
247 if( !FileUtils::isValidFile(FileNameUtils::getSeqFileName(prefix)) ){ in checkMandatoryFiles()
252 if( !FileUtils::isValidFile(FileNameUtils::getRoadmapFileName(prefix)) ){ in checkMandatoryFiles()
[all …]
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| H A D | annoIS.cc | 33 …return new ISGraph( FileNameUtils::getSeqFileName(prefix), FileNameUtils::getVelvetLastGraphFileNa… in loadGraph()
94 if( !FileUtils::isValidFile(FileNameUtils::getSeqFileName(prefix)) ){ in checkMandatoryFiles()
95 … cerr << "[annoIS] Error: Lack a mandatory file: " << FileNameUtils::getSeqFileName(prefix) << endl in checkMandatoryFiles()
183 return FileNameUtils::getLastGraphFileName(prefix); in getGraphFileName()
185 return FileNameUtils::getVelvetLastGraphFileName(prefix); in getGraphFileName()
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| H A D | meta-velveth.cc | 33 …VelvetUtils::importSequences( FileNameUtils::getSeqFileName(prefix), argc, argv, flagDoubleStrand,… in importSequences()
38 …VelvetUtils::setRoadmaps( FileNameUtils::getSeqFileName(prefix), FileNameUtils::getRoadmapFileName… in setRoadmaps()
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| H A D | FileNameUtils.hh | 5 class FileNameUtils { class
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| /dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/kernel/modules/pattern/ |
| H A D | PatternToFileTranslator.java | 25 import net.sourceforge.atunes.utils.FileNameUtils;
97 replace = FileNameUtils.getValidFileName(replace, osManager); in applyPattern()
99 replace = FileNameUtils.getValidFolderName(replace, osManager); in applyPattern()
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| /dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/kernel/modules/process/ |
| H A D | AbstractLocalAudioObjectTransferProcess.java | 44 import net.sourceforge.atunes.utils.FileNameUtils;
364 songRelativePath = FileNameUtils.getValidFolderName( in getDirectory()
406 newName = FileNameUtils.getValidFileName(this.fileManager in getName()
438 result = FileNameUtils.getValidFileName(result, osManager); in getNewFileName()
459 result = FileNameUtils.getValidFolderName(result, false, osManager); in getNewFolderPath()
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| H A D | ImportFilesProcess.java | 35 import net.sourceforge.atunes.utils.FileNameUtils;
136 songRelativePath = FileNameUtils in getDirectory()
193 newName = FileNameUtils.getValidFileName(this.getFileManager() in importFile()
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| /dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/utils/ |
| H A D | FileNameUtils.java | 47 public final class FileNameUtils { class
49 private FileNameUtils() { in FileNameUtils() method in FileNameUtils
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| H A D | LocalAudioObjectImageHandler.java | 310 return FileNameUtils.getValidFileName( in normalizeAlbumName()
319 return FileNameUtils.getValidFileName( in normalizeArtistName()
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| /dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/kernel/modules/podcast/ |
| H A D | PodcastFeedHandler.java | 48 import net.sourceforge.atunes.utils.FileNameUtils;
389 FileNameUtils.getValidFileName( in getDownloadPath()
410 .toString(), "/", FileNameUtils.getValidFileName( in getDownloadPath()
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| /dports/textproc/hs-lhs2tex/lhs2tex-1.24/src/ |
| H A D | Version.lhs.in | 10 > import FileNameUtils
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| H A D | FileNameUtils.lhs | 3 > module FileNameUtils ( extension module
|
| /dports/audio/atunes/atunes-3.1.2/src/net/sourceforge/atunes/kernel/modules/repository/ |
| H A D | FileManager.java | 36 import net.sourceforge.atunes.utils.FileNameUtils;
276 String validName = FileNameUtils.getValidFileName(name, this.osManager); in rename()
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| /dports/graphics/osg/OpenSceneGraph-OpenSceneGraph-3.6.5/src/osgPlugins/gles/ |
| H A D | GeometryInspector | 18 #include <osgDB/FileNameUtils>
|
| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarth/ |
| H A D | PluginLoader | 25 #include <osgDB/FileNameUtils>
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| H A D | Extension | 29 #include <osgDB/FileNameUtils>
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| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarthDrivers/tilepackage/ |
| H A D | BundleReader | 26 #include <osgDB/FileNameUtils>
|
| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/applications/osgearth_viewerIOS/ |
| H A D | StartViewerController.mm | 12 #include <osgDB/FileNameUtils>
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| H A D | ViewController.mm | 14 #include <osgDB/FileNameUtils>
|
| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarthDrivers/cache_leveldb/ |
| H A D | Tracker | 25 #include <osgDB/FileNameUtils>
|
| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarthDrivers/cache_rocksdb/ |
| H A D | Tracker | 25 #include <osgDB/FileNameUtils>
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| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarthDrivers/kml/ |
| H A D | KML | 26 #include <osgDB/FileNameUtils>
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| /dports/textproc/hs-lhs2tex/lhs2tex-1.24/ |
| H A D | lhs2tex.cabal | 92 FileNameUtils
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| H A D | Makefile | 8 src/Directives.lhs src/HsLexer.lhs src/FileNameUtils.lhs \
|
| /dports/graphics/osgearth/osgearth-osgearth-2.10.1/src/osgEarthSplat/ |
| H A D | LandUseTileSource | 25 #include <osgDB/FileNameUtils>
|