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Searched refs:FillCumulativePopcounts (Results 1 – 12 of 12) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dpgen_compress.cc163 …FillCumulativePopcounts(sample_include, 1 + (sample_ct / kBitsPerWord), sample_include_cumulative_… in main()
H A Dplink2_data.cc1502 FillCumulativePopcounts(src_subset, raw_sample_ctl, cumulative_popcount_buf); in CopyAndResort8bit()
1522 FillCumulativePopcounts(src_subset, raw_sample_ctl, cumulative_popcount_buf); in CopyAndResort16bit()
2362 …FillCumulativePopcounts(ctx.sample_include, raw_sample_ctl, ctx.sample_include_cumulative_popcount…
2376 FillCumulativePopcounts(ctx.sex_male, raw_sample_ctl, ctx.sex_male_cumulative_popcounts);
2426 … FillCumulativePopcounts(founder_info, raw_sample_ctl, ctx.founder_info_cumulative_popcounts);
2430 … FillCumulativePopcounts(ctx.founder_male, raw_sample_ctl, ctx.founder_male_cumulative_popcounts);
4891 … FillCumulativePopcounts(sample_include, raw_sample_ctl, ctx.sample_include_cumulative_popcounts);
H A Dplink2_matrix_calc.cc1546 … FillCumulativePopcounts(cur_sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in CalcKing()
2958 … FillCumulativePopcounts(cur_sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in CalcKingTableSubset()
4030 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in CalcGrm()
5040 …FillCumulativePopcounts(pca_sample_include, raw_sample_ctl, pca_sample_include_cumulative_popcount… in CalcPca()
5869 … FillCumulativePopcounts(variant_include, raw_variant_ctl, variant_include_cumulative_popcounts); in ScoreReport()
6188 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in ScoreReport()
7550 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in Vscore()
H A Dplink2_misc.cc3595 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts);
3597 FillCumulativePopcounts(sex_male, raw_sample_ctl, sex_male_cumulative_popcounts);
4505 FillCumulativePopcounts(founder_info, raw_sample_ctl, cumulative_popcounts);
4589 FillCumulativePopcounts(founder_knownsex, raw_sample_ctl, cumulative_popcounts);
6422 … FillCumulativePopcounts(sample_include, raw_sample_ctl, ctx.sample_include_cumulative_popcounts); in SampleCounts()
8553 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in Sdiff()
8635 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in Sdiff()
H A Dplink2_filter.cc720 FillCumulativePopcounts(orig_dups, raw_variant_ctl, orig_dups_cumulative_popcounts); in RmDup()
824 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts); in RmDup()
H A Dplink2_ld.cc1669 FillCumulativePopcounts(founder_info, raw_sample_ctl, founder_info_cumulative_popcounts); in LdPrune()
2892 FillCumulativePopcounts(founder_info, founder_ctl, founder_info_cumulative_popcounts); in LdConsole()
H A Dplink2_glm.cc11835 …FillCumulativePopcounts(cur_sample_include, raw_sample_ctl, common.sample_include_cumulative_popco… in GlmMain()
11844 …FillCumulativePopcounts(cur_sample_include_x, raw_sample_ctl, common.sample_include_x_cumulative_p… in GlmMain()
11862 …FillCumulativePopcounts(cur_sample_include_y, raw_sample_ctl, common.sample_include_y_cumulative_p… in GlmMain()
12435 …FillCumulativePopcounts(cur_sample_include, raw_sample_ctl, common.sample_include_cumulative_popco… in GlmMain()
12444 …FillCumulativePopcounts(cur_sample_include_x, raw_sample_ctl, common.sample_include_x_cumulative_p… in GlmMain()
12462 …FillCumulativePopcounts(cur_sample_include_y, raw_sample_ctl, common.sample_include_y_cumulative_p… in GlmMain()
H A Dplink2_export.cc712 … FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts);
9654 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts);
9837 FillCumulativePopcounts(sample_include, raw_sample_ctl, sample_include_cumulative_popcounts);
/dports/biology/plink/plink-ng-79b2df8c/2.0/include/
H A Dplink2_bits.h254 void FillCumulativePopcounts(const uintptr_t* subset_mask, uint32_t word_ct, uint32_t* cumulative_p…
H A Dplink2_bits.cc1384 void FillCumulativePopcounts(const uintptr_t* subset_mask, uint32_t word_ct, uint32_t* cumulative_p… in FillCumulativePopcounts() function
/dports/biology/plink/plink-ng-79b2df8c/2.0/pgenlibr/src/
H A Dpgenlibr.cpp689 plink2::FillCumulativePopcounts(sample_include, raw_sample_ctl, _subset_cumulative_popcounts); in SetSampleSubsetInternal()
/dports/biology/plink/plink-ng-79b2df8c/2.0/Python/
H A Dpgenlib.pyx38 …void FillCumulativePopcounts(const uintptr_t* subset_mask, uint32_t word_ct, uint32_t* cumulative_…
244 FillCumulativePopcounts(sample_include, raw_sample_ctl, self._subset_cumulative_popcounts)