| /dports/science/fasthenry/fasthenry-3.0wr/src/fasthenry/ |
| H A D | savemat_mod.c | 34 } Fmatrix; typedef
42 } Fmatrix; typedef
65 Fmatrix x;
75 fwrite(&x, sizeof(Fmatrix), 1, fp);
114 Fmatrix x;
123 fwrite(&x, sizeof(Fmatrix), 1, fp);
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| /dports/science/fasthenry/fasthenry-3.0wr/src/zbuf/ |
| H A D | savemat_mod.c | 35 } Fmatrix; typedef
43 } Fmatrix; typedef
66 Fmatrix x;
76 fwrite(&x, sizeof(Fmatrix), 1, fp);
115 Fmatrix x;
124 fwrite(&x, sizeof(Fmatrix), 1, fp);
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| /dports/science/fastcap/fastcap-2.0wr/src/ |
| H A D | savemat_mod.c | 67 } Fmatrix; typedef
89 Fmatrix x;
99 fwrite(&x, sizeof(Fmatrix), 1, fp);
136 Fmatrix x;
145 fwrite(&x, sizeof(Fmatrix), 1, fp);
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| /dports/biology/velvet/velvet_1.2.10/src/ |
| H A D | locallyCorrectedGraph.c | 64 static double **Fmatrix; variable
174 Fmatrix[i][0] = 0; in compareSequences()
176 Fmatrix[0][j] = 0; in compareSequences()
181 Fmatrix[i - 1][j - 1] + in compareSequences()
184 Choice2 = Fmatrix[i - 1][j] + INDEL; in compareSequences()
185 Choice3 = Fmatrix[i][j - 1] + INDEL; in compareSequences()
186 Fmatrix[i][j] = max(Choice1, Choice2, Choice3); in compareSequences()
190 maxScore = Fmatrix[length1][length2]; in compareSequences()
497 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
530 free(Fmatrix[index]); in deactivateLocalCorrectionSettings()
[all …]
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| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/ |
| H A D | locallyCorrectedGraph.c | 64 static double **Fmatrix; variable
174 Fmatrix[i][0] = 0; in compareSequences()
176 Fmatrix[0][j] = 0; in compareSequences()
181 Fmatrix[i - 1][j - 1] + in compareSequences()
184 Choice2 = Fmatrix[i - 1][j] + INDEL; in compareSequences()
185 Choice3 = Fmatrix[i][j - 1] + INDEL; in compareSequences()
186 Fmatrix[i][j] = max(Choice1, Choice2, Choice3); in compareSequences()
190 maxScore = Fmatrix[length1][length2]; in compareSequences()
501 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
534 free(Fmatrix[index]); in deactivateLocalCorrectionSettings()
[all …]
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| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/ |
| H A D | locallyCorrectedGraph.c | 65 static double **Fmatrix; variable
175 Fmatrix[i][0] = 0; in compareSequences()
177 Fmatrix[0][j] = 0; in compareSequences()
182 Fmatrix[i - 1][j - 1] + in compareSequences()
185 Choice2 = Fmatrix[i - 1][j] + INDEL; in compareSequences()
186 Choice3 = Fmatrix[i][j - 1] + INDEL; in compareSequences()
187 Fmatrix[i][j] = max(Choice1, Choice2, Choice3); in compareSequences()
191 maxScore = Fmatrix[length1][length2]; in compareSequences()
513 Fmatrix = callocOrExit(MAXREADLENGTH + 1, double *); in prepareGraphForLocalCorrections()
552 free(Fmatrix[index]); in deactivateLocalCorrectionSettings()
[all …]
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| H A D | correctedGraph.c | 80 static double **Fmatrix; variable
595 Fmatrix[i][0] = 0; in compareSequences()
597 Fmatrix[0][j] = 0; in compareSequences()
602 Fmatrix[i - 1][j - 1] + in compareSequences()
605 Choice2 = Fmatrix[i - 1][j] + INDEL; in compareSequences()
606 Choice3 = Fmatrix[i][j - 1] + INDEL; in compareSequences()
611 maxScore = Fmatrix[length1][length2]; in compareSequences()
650 if (Fmatrix[fastIndex][slowIndex] == in mapSlowOntoFast()
659 else if (Fmatrix[fastIndex][slowIndex] == in mapSlowOntoFast()
2683 free(Fmatrix[index]); in correctGraph()
[all …]
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| /dports/science/chemps2/CheMPS2-1.8.10/CheMPS2/include/chemps2/ |
| H A D | CASSCF.h | 382 …static double construct_gradient( DMRGSCFmatrix * Fmatrix, const DMRGSCFindices * idx, double * gr…
385 …static void add_hessian( DMRGSCFmatrix * Fmatrix, DMRGSCFwtilde * Wtilde, const DMRGSCFindices * i…
388 …static void diag_hessian( DMRGSCFmatrix * Fmatrix, const DMRGSCFwtilde * Wtilde, const DMRGSCFindi…
393 …static void augmented_hessian( DMRGSCFmatrix * Fmatrix, DMRGSCFwtilde * Wtilde, const DMRGSCFindic…
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| /dports/math/suitesparse-ldl/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-csparse/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-klu/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-btf/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-slip_lu/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-mongoose/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-rbio/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-config/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-colamd/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-ccolamd/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-cholmod/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-spqr/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-camd/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-amd/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-umfpack/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-cxsparse/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|
| /dports/math/suitesparse-graphblas/SuiteSparse-5.10.1/CHOLMOD/MATLAB/ |
| H A D | sdmult.c | 33 cholmod_dense *F, Fmatrix, *C ; in mexFunction() local
76 F = sputil_get_dense (pargin [1], &Fmatrix, &dummy) ; in mexFunction()
|