Searched refs:FormatSAM (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/abyss/abyss-2.3.1/Misc/ |
| H A D | samtobreak.hs | 236 data Format = FormatSAM | FormatSAMContigs | FormatSAMScaffolds | FormatText | FormatTSV deriving Eq constructor
264 OptSAM -> opt { optFormat = FormatSAM }
331 …when (optFormat == FormatSAM || optFormat == FormatSAMContigs || optFormat == FormatSAMScaffolds) …
335 when (optFormat == FormatSAMContigs || optFormat == FormatSAM) (do
340 when (optFormat == FormatSAMScaffolds || optFormat == FormatSAM) (do
347 …when (optFormat == FormatSAM || optFormat == FormatSAMContigs || optFormat == FormatSAMScaffolds) …
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| /dports/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/ |
| H A D | bam.c | 2951 static rc_t FormatSAM(BAM_Alignment const *self, in FormatSAM() function
3050 rc_t const rc = FormatSAM(self, &actsize, FORMAT_SAM_SCRATCH_SIZE, scratch); in FormatSAMBuffer()
3073 …rc_t const rc = (maxsize < FORMAT_SAM_SCRATCH_SIZE ? FormatSAMBuffer : FormatSAM)(self, &actsize, … in BAM_AlignmentFormatSAM()
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | bam.c | 3181 static rc_t FormatSAM(BAMAlignment const *self, in FormatSAM() function
3280 rc_t const rc = FormatSAM(self, &actsize, FORMAT_SAM_SCRATCH_SIZE, scratch); in FormatSAMBuffer()
3303 …rc_t const rc = (maxsize < FORMAT_SAM_SCRATCH_SIZE ? FormatSAMBuffer : FormatSAM)(self, &actsize, … in BAMAlignmentFormatSAM()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | bam.c | 3181 static rc_t FormatSAM(BAMAlignment const *self, in FormatSAM() function
3280 rc_t const rc = FormatSAM(self, &actsize, FORMAT_SAM_SCRATCH_SIZE, scratch); in FormatSAMBuffer()
3303 …rc_t const rc = (maxsize < FORMAT_SAM_SCRATCH_SIZE ? FormatSAMBuffer : FormatSAM)(self, &actsize, … in BAMAlignmentFormatSAM()
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