Searched refs:GSIFILE (Results 1 – 9 of 9) sorted by relevance
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
H A D | fasta2gsi.in | 45 local(*GSIFILE, $filenum, $keynum) = @_; 48 print GSIFILE $header; 57 local(*GSIFILE, $filename, $idx, $fmt) = @_; 60 print GSIFILE $record; 69 local(*GSIFILE, $key, $filenum, $offset) = @_; 72 print GSIFILE $record; 105 open(GSIFILE,">$gsifile"); 106 &GSI_WriteHeader(GSIFILE, 1, $recnum); 107 &GSI_WriteFileRecord(GSIFILE, $seqfile, 1, $sqd_fmt_fasta); 113 &GSI_WriteKeyRecord(GSIFILE, $key, $filenum, $offset); [all …]
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H A D | sqfuncs.h | 134 extern GSIFILE *GSIOpen(char *gsifile); 135 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile, long *ret_offset); 136 extern void GSIClose(GSIFILE *gsi);
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H A D | sqio.c | 1601 GSIFILE * 1604 GSIFILE *gsi; in GSIOpen() 1608 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen() 1635 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, long *ret_offset) in GSIGetOffset() 1683 GSIClose(GSIFILE *gsi) in GSIClose()
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H A D | squid.h | 151 typedef struct gsi_s GSIFILE; typedef
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/dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/ |
H A D | gsi.h | 50 typedef struct gsi_s GSIFILE; typedef 69 extern GSIFILE *GSIOpen(char *gsifile); 70 extern int GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3); 71 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile, 73 extern void GSIClose(GSIFILE *gsi);
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H A D | gsi.c | 49 GSIFILE * 52 GSIFILE *gsi; in GSIOpen() 55 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen() 90 GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3) in GSIGetRecord() 125 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, in GSIGetOffset() 168 GSIClose(GSIFILE *gsi) in GSIClose()
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/dports/biology/wise/wise2.4.1/src/HMMer2/ |
H A D | sqfuncs.h | 150 extern GSIFILE *GSIOpen(char *gsifile); 151 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile, 153 extern void GSIClose(GSIFILE *gsi);
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H A D | sqio.c | 1565 GSIFILE * 1568 GSIFILE *gsi; in GSIOpen() 1571 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen() 1606 GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3) in GSIGetRecord() 1641 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, in GSIGetOffset() 1684 GSIClose(GSIFILE *gsi) in GSIClose()
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H A D | squid.h | 102 typedef struct gsi_s GSIFILE; typedef
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