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Searched refs:GSIFILE (Results 1 – 9 of 9) sorted by relevance

/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/
H A Dfasta2gsi.in45 local(*GSIFILE, $filenum, $keynum) = @_;
48 print GSIFILE $header;
57 local(*GSIFILE, $filename, $idx, $fmt) = @_;
60 print GSIFILE $record;
69 local(*GSIFILE, $key, $filenum, $offset) = @_;
72 print GSIFILE $record;
105 open(GSIFILE,">$gsifile");
106 &GSI_WriteHeader(GSIFILE, 1, $recnum);
107 &GSI_WriteFileRecord(GSIFILE, $seqfile, 1, $sqd_fmt_fasta);
113 &GSI_WriteKeyRecord(GSIFILE, $key, $filenum, $offset);
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H A Dsqfuncs.h134 extern GSIFILE *GSIOpen(char *gsifile);
135 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile, long *ret_offset);
136 extern void GSIClose(GSIFILE *gsi);
H A Dsqio.c1601 GSIFILE *
1604 GSIFILE *gsi; in GSIOpen()
1608 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen()
1635 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, long *ret_offset) in GSIGetOffset()
1683 GSIClose(GSIFILE *gsi) in GSIClose()
H A Dsquid.h151 typedef struct gsi_s GSIFILE; typedef
/dports/biology/clustal-omega/clustal-omega-1.2.4/src/squid/
H A Dgsi.h50 typedef struct gsi_s GSIFILE; typedef
69 extern GSIFILE *GSIOpen(char *gsifile);
70 extern int GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3);
71 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile,
73 extern void GSIClose(GSIFILE *gsi);
H A Dgsi.c49 GSIFILE *
52 GSIFILE *gsi; in GSIOpen()
55 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen()
90 GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3) in GSIGetRecord()
125 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, in GSIGetOffset()
168 GSIClose(GSIFILE *gsi) in GSIClose()
/dports/biology/wise/wise2.4.1/src/HMMer2/
H A Dsqfuncs.h150 extern GSIFILE *GSIOpen(char *gsifile);
151 extern int GSIGetOffset(GSIFILE *gsi, char *key, char *sqfile,
153 extern void GSIClose(GSIFILE *gsi);
H A Dsqio.c1565 GSIFILE *
1568 GSIFILE *gsi; in GSIOpen()
1571 gsi = (GSIFILE *) MallocOrDie (sizeof(GSIFILE)); in GSIOpen()
1606 GSIGetRecord(GSIFILE *gsi, char *f1, sqd_uint16 *f2, sqd_uint32 *f3) in GSIGetRecord()
1641 GSIGetOffset(GSIFILE *gsi, char *key, char *ret_seqfile, in GSIGetOffset()
1684 GSIClose(GSIFILE *gsi) in GSIClose()
H A Dsquid.h102 typedef struct gsi_s GSIFILE; typedef