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Searched refs:GW_INSERT2END (Results 1 – 25 of 31) sorted by relevance

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/dports/biology/wise/wise2.4.1/src/models/
H A Destslimloop.dy108 calc="query->seg[i]->transition[GW_INSERT2END]"
129 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Destloop3.dy185 calc="query->seg[i]->transition[GW_INSERT2END]"
206 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Destslim3.dy101 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgenewisemodel.dy26 GW_INSERT2END,
618 out->transition[GW_INSERT2END] = tsu->transition[TSM_INSERT2END] * factor;
823 out->transition[GW_INSERT2END] = Probability2Score(seg->transition[GW_INSERT2END]);
H A Dgenewisemodel.h26 GW_INSERT2END, enumerator
H A Dgenewisemodel.c659 out->transition[GW_INSERT2END] = tsu->transition[TSM_INSERT2END] * factor; in GeneWiseSegment_from_ThreeStateUnit()
890 out->transition[GW_INSERT2END] = Probability2Score(seg->transition[GW_INSERT2END]); in GeneWiseScoreSegment_from_GeneWiseSegment()
H A Dgwlitemodel.dy120 seg->transition[GWL_INSERT2END] = gwm->seg[i]->transition[GW_INSERT2END];
H A Destwise3.dy183 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Destslimloop.c307 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstSlimLoop3()
316 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstSlimLoop3()
956 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstSlimLoop3()
965 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstSlimLoop3()
1420 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstSlimLoop3()
1452 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstSlimLoop3()
3519 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstSlimLoop3()
3535 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstSlimLoop3()
4790 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstSlimLoop3()
4799 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstSlimLoop3()
[all …]
H A Destfrag3.dy201 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgwlite.dy181 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgeneloop6.dy186 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgenewise6.dy187 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dpseudowise7.dy184 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgenestretch6.dy192 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Destloop3.c410 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstLoop3()
419 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstLoop3()
1154 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstLoop3()
1163 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstLoop3()
1694 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstLoop3()
1726 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstLoop3()
4887 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstLoop3()
4903 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstLoop3()
6613 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstLoop3()
6622 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstLoop3()
[all …]
H A Dgenephase6.dy186 calc="query->gws->seg[i]->transition[GW_INSERT2END]"
H A Dgwlitemodel.c65 seg->transition[GWL_INSERT2END] = gwm->seg[i]->transition[GW_INSERT2END]; in GwLite_from_GeneWise()
H A Destslim3.c287 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstSlim3()
847 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstSlim3()
1232 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstSlim3()
3172 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstSlim3()
4000 temp = cscore - (mat->query->seg[i]->transition[GW_INSERT2END]) - (0); in max_calc_special_EstSlim3()
4159 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstSlim3()
4398 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_dpenv_EstSlim3()
H A Dgeneloop21.dy436 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Dgenewise21.dy508 calc="query->seg[i]->transition[GW_INSERT2END]"
H A Destfrag3.c415 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstFrag3()
874 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstFrag3()
1357 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstFrag3()
4462 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstFrag3()
5701 temp = cscore - (mat->query->seg[i]->transition[GW_INSERT2END]) - (0); in max_calc_special_EstFrag3()
5994 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstFrag3()
6353 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_dpenv_EstFrag3()
H A Destwise3.c395 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_EstWise3()
1055 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_EstWise3()
1520 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_EstWise3()
4580 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_EstWise3()
5788 temp = cscore - (mat->query->seg[i]->transition[GW_INSERT2END]) - (0); in max_calc_special_EstWise3()
6047 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_EstWise3()
6386 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_dpenv_EstWise3()
H A Dgwlite.c315 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_GeneLiteModel()
964 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_GeneLiteModel()
1480 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_GeneLiteModel()
4206 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_GeneLiteModel()
5392 temp = cscore - (mat->query->seg[i]->transition[GW_INSERT2END]) - (0); in max_calc_special_GeneLiteModel()
5576 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_GeneLiteModel()
5910 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_dpenv_GeneLiteModel()
H A Dgeneloop6.c352 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_shatter_GeneLoop6()
1067 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in score_only_GeneLoop6()
1645 pau->score = mat->query->seg[i]->transition[GW_INSERT2END] + (0); in recalculate_PackAln_GeneLoop6()
4654 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in dc_optimised_start_end_calc_GeneLoop6()
5987 temp = cscore - (mat->query->seg[i]->transition[GW_INSERT2END]) - (0); in max_calc_special_GeneLoop6()
6214 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_GeneLoop6()
6614 temp = score + (mat->query->seg[i]->transition[GW_INSERT2END]) + (0) ; in calculate_dpenv_GeneLoop6()

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