Searched refs:GapCloseA (Results 1 – 8 of 8) sorted by relevance
10 SCORE *GapCloseA; member51 delete[] DPM.GapCloseA; in FreeDPMemSPN()92 delete[] DPM.GapCloseA; in AllocDPMem()104 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()145 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignSPN() local165 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignSPN()282 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignSPN()309 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignSPN()390 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSPN()
10 SCORE *GapCloseA; member60 delete[] DPM.GapCloseA; in AllocDPMem()72 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()110 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignSP() local130 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignSP()247 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignSP()274 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignSP()355 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSP()
12 SCORE *GapCloseA; member66 delete[] DPM.GapCloseA; in AllocDPMem()82 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()127 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignLE() local153 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignLE()308 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignLE()335 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignLE()416 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignLE()
61 delete[] DPM.GapCloseA; in FreeDPMemSPN()105 delete[] DPM.GapCloseA; in AllocDPMem()117 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()163 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignSPN() local183 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignSPN()300 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignSPN()327 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignSPN()408 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSPN()
69 delete[] DPM.GapCloseA; in AllocDPMem()81 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()123 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignSP() local143 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignSP()260 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignSP()287 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignSP()368 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignSP()
75 delete[] DPM.GapCloseA; in AllocDPMem()91 DPM.GapCloseA = new SCORE[uLength]; in AllocDPMem()140 SCORE *GapCloseA = DPM.GapCloseA; in GlobalAlignLE() local166 GapCloseA[i] = PA[i].m_scoreGapClose; in GlobalAlignLE()321 *ptrMCurr_j += GapOpenA[0] + GapCloseA[i-1]; in GlobalAlignLE()348 const SCORE scoreGapCloseAi_1 = GapCloseA[i-1]; in GlobalAlignLE()429 SCORE scoreD = DPrev[uLengthB-1] + GapCloseA[uLengthA-1]; in GlobalAlignLE()
273 SCORE *GapCloseA; member296 SCORE *GapCloseA; member339 SCORE *GapCloseA; member
442 delete[] glbalignsp.DPM.GapCloseA; in ~MuscleContext()474 delete[] glbalignspn.DPM.GapCloseA; in ~MuscleContext()501 delete[] glbalignle.DPM.GapCloseA; in ~MuscleContext()