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Searched refs:GeneWiseScoreFlat (Results 1 – 9 of 9) sorted by relevance

/dports/biology/wise/wise2.4.1/src/models/
H A Dgwquickdb.h64 GeneWiseScoreFlat * Wise2_init_GeneWiseQuickDB(GeneWiseQuickDB * gdb,int * return_status);
81 GeneWiseScoreFlat * Wise2_reload_GeneWiseQuickDB(GeneWiseScoreFlat * prev,GeneWiseQuickDB * gdb,int…
96 boolean Wise2_close_GeneWiseQuickDB(GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb);
112 boolean Wise2_dataentry_add_GeneWiseQuickDB(DataEntry * de,GeneWiseScoreFlat * gws,GeneWiseQuickDB …
H A Dgwquickdb.dy13 GeneWiseScoreFlat objects, layered
16 The GeneWiseScoreFlat objects give
37 GeneWiseScoreFlat * init_GeneWiseQuickDB(GeneWiseQuickDB * gdb,int * return_status)
53 GeneWiseScoreFlat * reload_GeneWiseQuickDB(GeneWiseScoreFlat * prev,GeneWiseQuickDB * gdb,int * ret…
71 boolean close_GeneWiseQuickDB(GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb)
82 boolean dataentry_add_GeneWiseQuickDB(DataEntry * de,GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb)
H A Dgwquickdb.c19 GeneWiseScoreFlat * init_GeneWiseQuickDB(GeneWiseQuickDB * gdb,int * return_status) in init_GeneWiseQuickDB()
45 GeneWiseScoreFlat * reload_GeneWiseQuickDB(GeneWiseScoreFlat * prev,GeneWiseQuickDB * gdb,int * ret… in reload_GeneWiseQuickDB()
72 boolean close_GeneWiseQuickDB(GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb) in close_GeneWiseQuickDB()
93 boolean dataentry_add_GeneWiseQuickDB(DataEntry * de,GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb) in dataentry_add_GeneWiseQuickDB()
H A Dgenewisemodel.h173 #define GeneWiseScoreFlat Wise2_GeneWiseScoreFlat macro
214 GeneWiseScoreFlat * Wise2_GeneWiseScoreFlat_from_GeneWiseScore(GeneWiseScore * gws);
230 GeneWiseScoreFlat * Wise2_free_GeneWiseScoreFlat(GeneWiseScoreFlat * obj);
726 GeneWiseScoreFlat * Wise2_hard_link_GeneWiseScoreFlat(GeneWiseScoreFlat * obj);
739 GeneWiseScoreFlat * Wise2_GeneWiseScoreFlat_alloc(void);
H A Destquick3.h22 GeneWiseScoreFlat* query;
36 GeneWiseScoreFlat* query; /* Query object placeholder */
166 PackAln * Wise2_PackAln_bestmemory_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNA…
185 EstQuick3 * Wise2_allocate_Expl_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAPar…
217 EstQuick3 * Wise2_allocate_Small_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAPa…
395 int Wise2_score_only_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParserScore * …
397 EstQuick3 * Wise2_allocate_EstQuick3_only(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAPar…
H A Dgenewisemodel.c41 GeneWiseScoreFlat * GeneWiseScoreFlat_from_GeneWiseScore(GeneWiseScore * gws) in GeneWiseScoreFlat_from_GeneWiseScore()
45 GeneWiseScoreFlat * gwsf; in GeneWiseScoreFlat_from_GeneWiseScore()
76 GeneWiseScoreFlat * free_GeneWiseScoreFlat(GeneWiseScoreFlat * obj) in free_GeneWiseScoreFlat()
1726 GeneWiseScoreFlat * hard_link_GeneWiseScoreFlat(GeneWiseScoreFlat * obj) in hard_link_GeneWiseScoreFlat()
1746 GeneWiseScoreFlat * GeneWiseScoreFlat_alloc(void) in GeneWiseScoreFlat_alloc()
1748 GeneWiseScoreFlat * out;/* out is exported at end of function */ in GeneWiseScoreFlat_alloc()
1752 if((out=(GeneWiseScoreFlat *) ckalloc (sizeof(GeneWiseScoreFlat))) == NULL) { in GeneWiseScoreFlat_alloc()
H A Dgenewisemodel.dy91 struct GeneWiseScoreFlat
125 GeneWiseScoreFlat * GeneWiseScoreFlat_from_GeneWiseScore(GeneWiseScore * gws)
129 GeneWiseScoreFlat * gwsf;
148 Frees the GeneWiseScoreFlat datastructure
153 GeneWiseScoreFlat * free_GeneWiseScoreFlat(GeneWiseScoreFlat * obj)
156 warn("Attempting to free a NULL GeneWiseScoreFlat object");
H A Destquick3.dy15 real GeneWiseScoreFlat*
H A Destquick3.c423 GeneWiseScoreFlat* query; in thread_loop_EstQuick3()
598 GeneWiseScoreFlat* query; in serial_search_EstQuick3()
684 int score_only_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParserScore * cp) in score_only_EstQuick3()
857 PackAln * PackAln_bestmemory_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParser… in PackAln_bestmemory_EstQuick3()
941 EstQuick3 * allocate_EstQuick3_only(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParserSco… in allocate_EstQuick3_only()
976 EstQuick3 * allocate_Expl_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParserSco… in allocate_Expl_EstQuick3()
1171 EstQuick3 * allocate_Small_EstQuick3(GeneWiseScoreFlat* query,ComplexSequence* target ,cDNAParserSc… in allocate_Small_EstQuick3()