| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/ |
| H A D | Spliced_exon.cpp | 187 pos[0] += chunk.GetMismatch() * direction[0]; in GetRowSeq_insertions()
188 pos[1] += chunk.GetMismatch() * direction[1]; in GetRowSeq_insertions()
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| H A D | Spliced_seg.cpp | 190 chunk_product_len = chunk_genomic_len = chunk.GetMismatch(); in Validate()
337 product_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
338 genomic_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/ |
| H A D | Spliced_exon.cpp | 187 pos[0] += chunk.GetMismatch() * direction[0]; in GetRowSeq_insertions()
188 pos[1] += chunk.GetMismatch() * direction[1]; in GetRowSeq_insertions()
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| H A D | Spliced_seg.cpp | 190 chunk_product_len = chunk_genomic_len = chunk.GetMismatch(); in Validate()
337 product_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
338 genomic_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | seq_align_util.cpp | 243 if ( !x_Mismatch(ch.GetMismatch()) ) return false; in x_AddExonPart()
244 gen_offset += ch.GetMismatch(); in x_AddExonPart()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | seq_align_util.cpp | 243 if ( !x_Mismatch(ch.GetMismatch()) ) return false; in x_AddExonPart()
244 gen_offset += ch.GetMismatch(); in x_AddExonPart()
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| /dports/www/chromium-legacy/chromium-88.0.4324.182/components/feed/core/ |
| H A D | feed_scheduler_host.cc | 42 FeedHostMismatch GetMismatch(bool feed_is_set, bool host_is_set) { in GetMismatch() function
288 GetMismatch(has_outstanding_request, in ShouldSessionRequestData()
309 GetMismatch(has_content, scheduler_thinks_has_content)); in ShouldSessionRequestData()
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| /dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/components/feed/core/ |
| H A D | feed_scheduler_host.cc | 42 FeedHostMismatch GetMismatch(bool feed_is_set, bool host_is_set) { in GetMismatch() function
288 GetMismatch(has_outstanding_request, in ShouldSessionRequestData()
309 GetMismatch(has_content, scheduler_thinks_has_content)); in ShouldSessionRequestData()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
| H A D | align_compare.cpp | 232 product_dir * ((*part_it)->GetMismatch()-1); in s_GetAlignmentMismatches()
240 genomic_dir * ((*part_it)->GetMismatch()-1); in s_GetAlignmentMismatches()
245 product_pos += product_dir * (*part_it)->GetMismatch(); in s_GetAlignmentMismatches()
246 genomic_pos += genomic_dir * (*part_it)->GetMismatch(); in s_GetAlignmentMismatches()
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| H A D | best_placement.cpp | 374 res.neg += chunk->GetMismatch(); in s_GetIdentOdds_nucSS()
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| H A D | score_lookup.cpp | 716 distance_5prime += part.GetMismatch(); in Get()
743 distance_3prime += part.GetMismatch(); in Get()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/seqqa/ |
| H A D | single_aln_tests.cpp | 807 product_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
808 genomic_lens.push_back(part.GetMismatch()); in s_ExonToDenseg()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/ |
| H A D | psl_record.cpp | 78 misMatchSize += chunk.GetMismatch(); in sExonChunkAppendStats()
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| H A D | aln_writer.cpp | 403 interval_width = exon_chunk->GetMismatch(); in AddGaps()
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| H A D | gff3flybase_writer.cpp | 492 record.AddMatch(chunk.GetMismatch()); in xAssignAlignmentSplicedGap()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
| H A D | project_exons.cpp | 796 : chunk.IsMismatch() ? chunk.GetMismatch() in ProjectExon_oldlogic()
954 : chunk.IsMismatch() ? chunk.GetMismatch() in SBlocks()
1745 : chunk.IsMismatch() ? chunk.GetMismatch()
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| H A D | transform_align.cpp | 500 total += (*part_it)->GetMismatch(); in RecalculateExonIdty()
1134 product_chunk_len = (*chunk)->GetMismatch(); in TrimLeftExon()
1261 product_chunk_len = (*chunk)->GetMismatch(); in TrimRightExon()
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| H A D | internal_stops.cpp | 369 len = chunk.GetMismatch(); in ChunkSize()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
| H A D | score_builder_base.cpp | 389 part_len = chunk.GetMismatch(); in s_GetCountIdentityMismatch()
1073 len = part.GetMismatch(); in AddSplignScores()
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| H A D | alntext.cpp | 347 len = chunk.GetMismatch(); in CProteinAlignText()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/ |
| H A D | score_builder_base.cpp | 389 part_len = chunk.GetMismatch(); in s_GetCountIdentityMismatch()
1073 len = part.GetMismatch(); in AddSplignScores()
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| H A D | alntext.cpp | 347 len = chunk.GetMismatch(); in CProteinAlignText()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/unit_test/ |
| H A D | unit_test_gene_model.cpp | 926 product_pos += chunk.GetMismatch(); in BOOST_AUTO_TEST_CASE()
1040 product_pos += chunk.GetMismatch(); in BOOST_AUTO_TEST_CASE()
1166 product_pos += chunk.GetMismatch(); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/magicblast/ |
| H A D | magicblast_util.cpp | 1208 edit_distance += (*it)->GetMismatch(); in PrintSAM()
1209 num += (*it)->GetMismatch(); in PrintSAM()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/prosplign/ |
| H A D | Info.cpp | 683 len = chunk.GetMismatch(); in CAliChunk()
790 len = chunk.GetMismatch(); in TestExonLength()
|