Searched refs:GetQueryStrand (Results 1 – 10 of 10) sorted by relevance
116 if(hitref->GetQueryStrand() == false) { in Run()
1170 if(h.NotNull() && h->GetQueryStrand() == false) { in Run()
111 bool GetQueryStrand(void) const;
509 if((*hri)->GetQueryStrand() == false) { in s_MergeAbutting()896 const int qinc = h.GetQueryStrand()? 1 : -1; in s_TrackHit()
127 if (hit->GetQueryStrand() == false) { in Run()
347 if(hit->GetQueryStrand() == false) { in x_IterateSeqAlignList()405 const ENa_strand query_strand = h.GetQueryStrand()? eNa_strand_plus: in x_DumpOutput()726 if(hit->GetQueryStrand() == false) { in x_LoadConstraints()
320 bool CAlignShadow::GetQueryStrand(void) const in GetQueryStrand() function in CAlignShadow383 SetQueryStrand(!GetQueryStrand()); in FlipStrands()
321 if(hit->GetQueryStrand() == false) { in x_GetNextPair()880 if(hitref->GetQueryStrand() == false) { in x_GetBl2SeqHits()
263 if (!hitref->GetQueryStrand()) in CreateCompartmentAccessor()
462 if (hitref->GetQueryStrand() == false) { in GetSplignCompartments()