Searched refs:GetSubjId (Results 1 – 12 of 12) sorted by relevance
173 rv = *(lhs->GetSubjId()) < *(rhs->GetSubjId()); in operator ()()178 const TIntId co = lhs->GetSubjId()->CompareOrdered( *(rhs->GetSubjId()) ); in operator ()()197 const TIntId sid = lhs->GetSubjId()->CompareOrdered(*(rhs->GetSubjId())); in operator ()()
104 const TId& GetSubjId(void) const;
1438 CGapInfo<THit> gapi( *(*istart)->GetSubjId(), scope); in Run()1477 CGapInfo<THit> gapi( *(*istart)->GetSubjId(), scope); in Run()1561 seqid_subj->Assign(*(h.GetSubjId())); in AsSeqAlignSet()
572 ! (*ii)->GetSubjId()->Match(*(h0->GetSubjId())) || in s_MergeAbutting()
234 const string strid = rv->GetSubjId()->GetSeqIdString(true); in s_ReadBlastHit()270 CConstRef<CSeq_id> subj (hitrefs[m_CurHitRef]->GetSubjId()); in x_GetNextPair()273 && hitrefs[m_CurHitRef]->GetSubjId()->Match(*subj) ) in x_GetNextPair()297 subj = hitref->GetSubjId(); in x_GetNextPair()319 subj = hit->GetSubjId(); in x_GetNextPair()330 hit->GetSubjId()->Match(*subj) == false) { in x_GetNextPair()344 THit::TId subj = m_PendingHits[0]->GetSubjId(); in x_GetNextPair()350 h->GetSubjId()->Match(*subj) == false) { in x_GetNextPair()421 && hitrefs.front()->GetSubjId()->Match(*(hitrefs_next.front()->GetSubjId()))) in x_GetNextComp()436 <<" "<<hitrefs.front()->GetSubjId()->AsFastaString() in x_GetNextComp()[all …]
237 id_subj = hit->GetSubjId(); in x_ReadInputHits()256 id_subj = hit->GetSubjId(); in x_ReadInputHits()259 || false == id_subj -> Match(*(hit->GetSubjId())) ) in x_ReadInputHits()267 id_subj = hit->GetSubjId(); in x_ReadInputHits()
328 const string subj (hit->GetSubjId()->GetSeqIdString(true)); in x_DoWithExternalHits()565 const THit::TId& subjid_lhs (m_HitRefs.front()->GetSubjId()); in operator <()566 const THit::TId& subjid_rhs (rhs.m_HitRefs.front()->GetSubjId()); in operator <()
131 string new_s = GetSeqIdString(*hit->GetSubjId()); in Run()
210 CConstRef<objects::CSeq_id> subj_id = tr->GetSubjId(); in BOOST_AUTO_TEST_CASE()323 CConstRef<objects::CSeq_id> subj_id = tr->GetSubjId(); in BOOST_AUTO_TEST_CASE()
196 subj_id->Assign(*(*h)->GetSubjId()); in MakeCompartment()228 subj_id->Assign(*hitrefs.front()->GetSubjId()); in MakeCompartment()
276 const CAlignShadow::TId& CAlignShadow::GetSubjId(void) const in GetSubjId() function in CAlignShadow376 SetQueryId(GetSubjId()); in SwapQS()
776 hr->SetSubjId(h->GetSubjId()); in x_SplitQualifyingHits()793 hr->SetSubjId(h->GetSubjId()); in x_SplitQualifyingHits()930 << phitrefs->front()->GetSubjId()->GetSeqIdString(true) in x_SetPattern()958 << phitrefs->front()->GetSubjId()->AsFastaString() << ')' in x_SetPattern()1601 THit::TId id_query (phitrefs->front()->GetSubjId()); in x_RunOnCompartment()1650 x_LoadSequence(&m_genomic, *(phitrefs->front()->GetSubjId()), in x_RunOnCompartment()