/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/concordance/ |
H A D | dream3-chr21.vcf | 28 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 234 21 9645694 . AT A . t_lod_fstar ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=6.92;TLOD=4.40 GT:AD:AF:ALT_F1… 793 21 18085224 . AG A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=24.62 GT:AD:AF:ALT_F1R2:AL… 851 21 21562784 . T TATGAC . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=10.24 GT:AD:AF:ALT_F1R… 855 21 21984581 . TTCC T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.01;TLOD=18.55 GT:AD:AF:ALT_F1R2:… 872 21 23256657 . C CGT . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.62;TLOD=16.63 GT:AD:AF:ALT_F1R2:A… 880 21 23875969 . TAC T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=7.53;TLOD=6.65 GT:AD:AF:ALT_F1R2:AL… 907 21 26065899 . TCTTA T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=4.52;TLOD=8.04 GT:AD:AF:ALT_F1R2:… 940 21 29455472 . G GTACC . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=2.42;TLOD=17.62 GT:AD:AF:ALT_F1R2… 1021 21 33921554 . C CT . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.73;TLOD=8.76 GT:AD:AF:ALT_F1R2:ALT… [all …]
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H A D | gatk3-dream3-mini.vcf | 29 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 131 1 797509 rs377122070 GATA G . PASS DB;ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=8.94;TLOD=8.12;TLOD_FWD=… 132 1 836343 . C A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.55;TLOD=55.01;TLOD_FWD=42.59;TLOD_REV… 133 1 1047029 . G GATGAAGACGCACT . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.32;TLOD=61.07;TLOD_FWD=… 134 1 1090609 . AG A . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=12.93;TLOD=66.36;TLOD_FWD=39.89;TLOD_R… 135 1 1259680 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=9.57;TLOD=25.69;TLOD_FWD=26.66;TLOD_REV… 136 1 1261932 . ACCTGCTGCAGACAGCGGGGCCTAGTGGTCT A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=22.36;TLO… 137 1 1594640 . T C . PASS ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=9.33;TLOD=6.59;TLOD_FWD=0.00;TLOD_REV=6… 138 1 1594642 . C A . PASS ECNT=2;HCNT=1;MAX_ED=2;MIN_ED=2;NLOD=9.33;TLOD=6.59;TLOD_FWD=0.00;TLOD_REV=6… 139 1 1610811 . G GTGTCT . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=13.26;TLOD=67.58;TLOD_FWD=42.47;TL… [all …]
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H A D | gatk3-dream3-x.vcf | 29 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 131 22 50357818 . G T . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.49;TLOD=18.28;TLOD_FWD=14.05;TLOD_… 132 22 50903791 . T C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=13.30;TLOD=20.39;TLOD_FWD=16.10;TLOD_… 133 22 51143566 . C CATGGTAAGTCAGTCG . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=20.86;TLOD=67.08;TLOD_… 134 X 195540 . A ACCGTTACTTCCCGACAGAAGAAT . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=15.25;TLOD=30.59;… 135 X 227996 . G A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=6.16;TLOD=8.09;TLOD_FWD=3.98;TLOD_REV=4.… 136 X 692817 . C G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=15.04;TLOD=22.36;TLOD_FWD=8.81;TLOD_REV=… 137 X 734458 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=11.13;TLOD=29.31;TLOD_FWD=17.11;TLOD_REV… 138 X 1222746 . T C . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=5.11;TLOD=12.79;TLOD_FWD=10.79;TLOD_REV… 139 X 1985970 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=8.42;TLOD=16.14;TLOD_FWD=7.48;TLOD_REV=… [all …]
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/dports/lang/gawk/gawk-5.1.1/ |
H A D | str_array.c | 462 #define HCNT 31 in str_dump() macro 467 static size_t hash_dist[HCNT + 1]; in str_dump() 497 memset(hash_dist, '\0', (HCNT + 1) * sizeof(size_t)); in str_dump() 502 if (bucket_cnt >= HCNT) in str_dump() 503 bucket_cnt = HCNT; in str_dump() 510 for (i = 0; i <= HCNT; i++) { in str_dump() 513 if (i == HCNT) in str_dump() 515 (unsigned long) HCNT, (unsigned long) hash_dist[i]); in str_dump() 538 #undef HCNT in str_dump()
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H A D | int_array.c | 623 #define HCNT 31 in int_dump() macro 631 static size_t hash_dist[HCNT + 1]; in int_dump() 669 memset(hash_dist, '\0', (HCNT + 1) * sizeof(size_t)); in int_dump() 674 if (bucket_cnt >= HCNT) in int_dump() 675 bucket_cnt = HCNT; in int_dump() 682 for (j = 0; j <= HCNT; j++) { in int_dump() 685 if (j == HCNT) in int_dump() 687 (unsigned long) HCNT, (unsigned long) hash_dist[j]); in int_dump() 725 #undef HCNT in int_dump()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/ |
H A D | M2_test_custom_maf_fields.vcf | 25 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 123 3 10909683 rs71319774 T C . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=4;MAX_… 124 …. clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=… 125 3 11058129 . G A . alt_allele_in_normal ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=28.04;TLOD=6.77 GT:AD:… 126 3 44515611 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=14.08 GT:AD:AF:ALT_F1R2:ALT_… 127 3 44524478 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=19.03 GT:AD:AF:ALT_F1R2:ALT… 128 3 46640880 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=11.67 GT:AD:AF:ALT_F1R2:ALT_…
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H A D | M2_test_custom_maf_fields_tumor_only.vcf | 25 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 122 3 10909683 rs71319774 T C . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=4;MAX_… 123 …. clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=… 124 3 11058129 . G A . alt_allele_in_normal ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=28.04;TLOD=6.77 GT:AD:… 125 3 44515611 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=14.08 GT:AD:AF:ALT_F1R2:ALT_… 126 3 44524478 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=19.03 GT:AD:AF:ALT_F1R2:ALT… 127 3 46640880 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=11.67 GT:AD:AF:ALT_F1R2:ALT_…
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H A D | NotM2_test_custom_maf_fields.vcf | 25 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 121 3 10909683 rs71319774 T C . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=4;MAX_… 122 …. clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=… 123 3 11058129 . G A . alt_allele_in_normal ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=28.04;TLOD=6.77 GT:AD:… 124 3 44515611 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=14.08 GT:AD:AF:ALT_F1R2:ALT_… 125 3 44524478 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=19.03 GT:AD:AF:ALT_F1R2:ALT… 126 3 46640880 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=11.67 GT:AD:AF:ALT_F1R2:ALT_…
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H A D | NotM2_test_custom_maf_fields_tumor_only.vcf | 25 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 121 3 10909683 rs71319774 T C . clustered_events;multi_event_alt_allele_in_normal DB;ECNT=2;HCNT=4;MAX_… 122 …. clustered_events;multi_event_alt_allele_in_normal;t_lod_fstar DB;ECNT=2;HCNT=4;MAX_ED=10;MIN_ED=… 123 3 11058129 . G A . alt_allele_in_normal ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;NLOD=28.04;TLOD=6.77 GT:AD:… 124 3 44515611 . T A . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=5.42;TLOD=14.08 GT:AD:AF:ALT_F1R2:ALT_… 125 3 44524478 . A G . PASS ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=10.53;TLOD=19.03 GT:AD:AF:ALT_F1R2:ALT… 126 3 46640880 . G C . PASS ECNT=1;HCNT=1;MAX_ED=.;MIN_ED=.;NLOD=3.26;TLOD=11.67 GT:AD:AF:ALT_F1R2:ALT_…
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H A D | NA12878.ob_filtered.vcf | 42 ##INFO=<ID=HCNT,Number=1,Type=String,Description="Number of haplotypes that support this variant"> 143 1 1356341 . TTCC T . alt_allele_in_normal;in_exac;str_contraction ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;N… 144 1 1670432 . T C . alt_allele_in_normal;in_exac ECNT=1;HCNT=12;MAX_ED=.;MIN_ED=.;NLOD=143.75;TLOD=14… 145 1 2124345 . TTTG T . alt_allele_in_normal;in_exac;str_contraction ECNT=1;HCNT=4;MAX_ED=.;MIN_ED=.;N… 146 1 4772582 . GCCA G . alt_allele_in_normal;in_exac;str_contraction;t_lod_fstar ECNT=1;HCNT=1;MAX_ED=… 147 1 6536010 . TCTC T . alt_allele_in_normal;in_exac;str_contraction ECNT=1;HCNT=3;MAX_ED=.;MIN_ED=.;N… 148 1 6638842 . CGCT C . in_exac;str_contraction ECNT=1;HCNT=2;MAX_ED=.;MIN_ED=.;NLOD=20.10;RPA=7,6;RU=… 149 1 6685231 . CCCG C . alt_allele_in_normal;in_exac;str_contraction ECNT=1;HCNT=6;MAX_ED=.;MIN_ED=.;N… 150 1 6727802 rs374290353 TTC T . alt_allele_in_normal;in_exac;str_contraction DB;ECNT=1;HCNT=2;MAX_ED=…
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/dports/misc/rump/buildrump.sh-b914579/src/sys/dev/microcode/aic7xxx/ |
H A D | aic7xxx.seq | 801 mov A, HCNT[0]; 819 add HCNT[0], A; 820 adc HCNT[1], -1; 821 adc HCNT[2], -1 ret; 882 bmov STCNT, HCNT, 3; 1245 bmov STCNT, HCNT, 3; 1396 bmov HCNT, STCNT, 3; 2128 mov HCNT[0], SINDEX; 2130 clr HCNT[1]; 2131 clr HCNT[2] ret; [all …]
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/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/media/cec/platform/seco/ |
H A D | seco-cec.h | 55 #define HCNT (BRA_SMB_BASE_ADDR + 2) macro
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H A D | seco-cec.c | 69 outb(0x00, HCNT); in smb_word_op() 72 inb(HCNT); in smb_word_op() 79 outb(BRA_START + _data_format, HCNT); in smb_word_op()
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/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/media/cec/platform/seco/ |
H A D | seco-cec.h | 55 #define HCNT (BRA_SMB_BASE_ADDR + 2) macro
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H A D | seco-cec.c | 69 outb(0x00, HCNT); in smb_word_op() 72 inb(HCNT); in smb_word_op() 79 outb(BRA_START + _data_format, HCNT); in smb_word_op()
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/dports/multimedia/libv4l/linux-5.13-rc2/drivers/media/cec/platform/seco/ |
H A D | seco-cec.h | 55 #define HCNT (BRA_SMB_BASE_ADDR + 2) macro
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H A D | seco-cec.c | 69 outb(0x00, HCNT); in smb_word_op() 72 inb(HCNT); in smb_word_op() 79 outb(BRA_START + _data_format, HCNT); in smb_word_op()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/drivers/scsi/aic7xxx/ |
H A D | aic7xxx.seq | 798 mov A, HCNT[0]; 816 add HCNT[0], A; 817 adc HCNT[1], -1; 818 adc HCNT[2], -1 ret; 878 bmov STCNT, HCNT, 3; 1245 bmov STCNT, HCNT, 3; 1393 bmov HCNT, STCNT, 3; 2125 mov HCNT[0], SINDEX; 2127 clr HCNT[1]; 2128 clr HCNT[2] ret; [all …]
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/dports/multimedia/v4l-utils/linux-5.13-rc2/drivers/scsi/aic7xxx/ |
H A D | aic7xxx.seq | 798 mov A, HCNT[0]; 816 add HCNT[0], A; 817 adc HCNT[1], -1; 818 adc HCNT[2], -1 ret; 878 bmov STCNT, HCNT, 3; 1245 bmov STCNT, HCNT, 3; 1393 bmov HCNT, STCNT, 3; 2125 mov HCNT[0], SINDEX; 2127 clr HCNT[1]; 2128 clr HCNT[2] ret; [all …]
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/dports/multimedia/libv4l/linux-5.13-rc2/drivers/scsi/aic7xxx/ |
H A D | aic7xxx.seq | 798 mov A, HCNT[0]; 816 add HCNT[0], A; 817 adc HCNT[1], -1; 818 adc HCNT[2], -1 ret; 878 bmov STCNT, HCNT, 3; 1245 bmov STCNT, HCNT, 3; 1393 bmov HCNT, STCNT, 3; 2125 mov HCNT[0], SINDEX; 2127 clr HCNT[1]; 2128 clr HCNT[2] ret; [all …]
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H A D | aic79xx_core.c | 1449 ahd_outl(ahd, HCNT, datacnt & AHD_SG_LEN_MASK); in ahd_run_data_fifo() 1607 ahd_outl(ahd, HCNT, data_len & AHD_SG_LEN_MASK); in ahd_run_data_fifo() 1878 ahd_outw(ahd, HCNT, AHD_SENSE_BUFSIZE); in ahd_handle_seqint() 1879 ahd_outb(ahd, HCNT + 2, 0); in ahd_handle_seqint() 5878 ahd_outb(ahd, HCNT + 2, resid >> 16); in ahd_reinitialize_dataptrs() 5879 ahd_outb(ahd, HCNT + 1, resid >> 8); in ahd_reinitialize_dataptrs() 5880 ahd_outb(ahd, HCNT, resid); in ahd_reinitialize_dataptrs() 9829 (ahd_inb(ahd, HCNT) in ahd_dump_card_state() 9830 | (ahd_inb(ahd, HCNT + 1) << 8) in ahd_dump_card_state() 9831 | (ahd_inb(ahd, HCNT + 2) << 16))); in ahd_dump_card_state()
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/dports/games/libretro-yabause/yabause-ea5b118/yabause/src/ |
H A D | vdp2.c | 536 Vdp2Regs->HCNT = hcnt << 1; in Vdp2SendExternalLatch() 584 return Vdp2Regs->HCNT; in Vdp2ReadWord()
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H A D | vdp2.h | 64 u16 HCNT; // 0x25F80008 member
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/dports/emulators/jzintv/jzintv-20200712-src/examples/banktest/ |
H A D | banktest.asm | 130 HCNT EQU 3 ; Number of ticks between "hex updates" define
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/dports/misc/rump/buildrump.sh-b914579/src/sys/dev/ic/ |
H A D | aic79xx.c | 608 ahd_outl(ahd, HCNT, datacnt & AHD_SG_LEN_MASK); in ahd_run_data_fifo() 769 ahd_outl(ahd, HCNT, data_len & AHD_SG_LEN_MASK); in ahd_run_data_fifo() 999 ahd_outw(ahd, HCNT, AHD_SENSE_BUFSIZE); in ahd_handle_seqint() 1000 ahd_outb(ahd, HCNT + 2, 0); in ahd_handle_seqint() 4984 ahd_outb(ahd, HCNT + 2, resid >> 16); in ahd_reinitialize_dataptrs() 4985 ahd_outb(ahd, HCNT + 1, resid >> 8); in ahd_reinitialize_dataptrs() 4986 ahd_outb(ahd, HCNT, resid); in ahd_reinitialize_dataptrs() 8831 (ahd_inb(ahd, HCNT) in ahd_dump_card_state() 8832 | (ahd_inb(ahd, HCNT + 1) << 8) in ahd_dump_card_state() 8833 | (ahd_inb(ahd, HCNT + 2) << 16))); in ahd_dump_card_state()
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