Searched refs:HasBadStartCodon (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objtools/validator/ |
| H A D | utilities.hpp | 237 bool NCBI_VALIDATOR_EXPORT HasBadStartCodon(const CSeq_feat& feat, CScope &scope, bool ignore_excep…
241 bool NCBI_VALIDATOR_EXPORT HasBadStartCodon(const CSeq_loc& loc, const string& transl_prot);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | utilities.cpp | 2292 bool HasBadStartCodon(const CSeq_loc& loc, const string& transl_prot) in HasBadStartCodon() function
2347 bool HasBadStartCodon(const CSeq_feat& feat, CScope& scope, bool ignore_exceptions) in HasBadStartCodon() function
2373 return HasBadStartCodon(feat.GetLocation(), transl_prot); in HasBadStartCodon()
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| H A D | translation_problems.cpp | 161 if (HasBadStartCodon(feat.GetLocation(), transl_prot)) { in CalculateTranslationProblems()
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| H A D | cdregion_validator.cpp | 286 if (HasBadStartCodon(feat.GetLocation(), transl_prot)) { in GetInternalStopErrorMessage()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/unit_test/ |
| H A D | unit_test_validator.cpp | 1589 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
12680 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
12775 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
15140 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
19261 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
19306 BOOST_CHECK_EQUAL(validator::HasBadStartCodon(*cds, scope, false), true); in BOOST_AUTO_TEST_CASE()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin3.c | 9132 static Boolean HasBadStartCodon (SeqFeatPtr sfp) in HasBadStartCodon() function
9917 if (HasBadStartCodon(sfp)) { in ConvertOneCDS()
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