| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | header.h | 211 char *ID_buf; // temporary buffer for sam_hdr_pg_id member
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| H A D | header.c | 2143 char *new_ID_buf = realloc(hrecs->ID_buf, name_len + name_extra); in sam_hdr_pg_id()
2146 hrecs->ID_buf = new_ID_buf; in sam_hdr_pg_id()
2151 snprintf(hrecs->ID_buf, hrecs->ID_buf_sz, "%.1000s.%d", name, hrecs->ID_cnt++); in sam_hdr_pg_id()
2152 k = kh_get(m_s2i, hrecs->pg_hash, hrecs->ID_buf); in sam_hdr_pg_id()
2155 return hrecs->ID_buf; in sam_hdr_pg_id()
2413 if (hrecs->ID_buf) in sam_hrecs_free()
2414 free(hrecs->ID_buf); in sam_hrecs_free()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | header.h | 211 char *ID_buf; // temporary buffer for sam_hdr_pg_id member
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| H A D | header.c | 2148 char *new_ID_buf = realloc(hrecs->ID_buf, name_len + name_extra); in sam_hdr_pg_id()
2151 hrecs->ID_buf = new_ID_buf; in sam_hdr_pg_id()
2156 snprintf(hrecs->ID_buf, hrecs->ID_buf_sz, "%.1000s.%d", name, hrecs->ID_cnt++); in sam_hdr_pg_id()
2157 k = kh_get(m_s2i, hrecs->pg_hash, hrecs->ID_buf); in sam_hdr_pg_id()
2160 return hrecs->ID_buf; in sam_hdr_pg_id()
2418 if (hrecs->ID_buf) in sam_hrecs_free()
2419 free(hrecs->ID_buf); in sam_hrecs_free()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | header.h | 211 char *ID_buf; // temporary buffer for sam_hdr_pg_id member
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| H A D | header.c | 2148 char *new_ID_buf = realloc(hrecs->ID_buf, name_len + name_extra); in sam_hdr_pg_id()
2151 hrecs->ID_buf = new_ID_buf; in sam_hdr_pg_id()
2156 snprintf(hrecs->ID_buf, hrecs->ID_buf_sz, "%.1000s.%d", name, hrecs->ID_cnt++); in sam_hdr_pg_id()
2157 k = kh_get(m_s2i, hrecs->pg_hash, hrecs->ID_buf); in sam_hdr_pg_id()
2160 return hrecs->ID_buf; in sam_hdr_pg_id()
2418 if (hrecs->ID_buf) in sam_hrecs_free()
2419 free(hrecs->ID_buf); in sam_hrecs_free()
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| /dports/biology/iolib/io_lib-io_lib-1-14-10/io_lib/ |
| H A D | sam_header.h | 218 char ID_buf[1024]; // temporary buffer member
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| H A D | sam_header.c | 1189 sprintf(sh->ID_buf, "%.1000s.%d", name, sh->ID_cnt++); in sam_hdr_PG_ID()
1190 } while (HashTableSearch(sh->pg_hash, sh->ID_buf, 0)); in sam_hdr_PG_ID()
1192 return sh->ID_buf; in sam_hdr_PG_ID()
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| /dports/biology/vt/vt-0.57721/lib/htslib/cram/ |
| H A D | sam_header.h | 213 char ID_buf[1024]; // temporary buffer member
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| H A D | sam_header.c | 1167 sprintf(sh->ID_buf, "%.1000s.%d", name, sh->ID_cnt++); in sam_hdr_PG_ID()
1168 k = kh_get(m_s2i, sh->pg_hash, sh->ID_buf); in sam_hdr_PG_ID()
1171 return sh->ID_buf; in sam_hdr_PG_ID()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/cram/ |
| H A D | sam_header.h | 213 char ID_buf[1024]; // temporary buffer member
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| H A D | sam_header.c | 1167 sprintf(sh->ID_buf, "%.1000s.%d", name, sh->ID_cnt++); in sam_hdr_PG_ID()
1168 k = kh_get(m_s2i, sh->pg_hash, sh->ID_buf); in sam_hdr_PG_ID()
1171 return sh->ID_buf; in sam_hdr_PG_ID()
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| /dports/biology/stacks/stacks-2.4/htslib/cram/ |
| H A D | sam_header.h | 213 char ID_buf[1024]; // temporary buffer member
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| H A D | sam_header.c | 1167 sprintf(sh->ID_buf, "%.1000s.%d", name, sh->ID_cnt++); in sam_hdr_PG_ID()
1168 k = kh_get(m_s2i, sh->pg_hash, sh->ID_buf); in sam_hdr_PG_ID()
1171 return sh->ID_buf; in sam_hdr_PG_ID()
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| /dports/biology/kallisto/kallisto-0.46.1/ext/htslib/cram/ |
| H A D | sam_header.h | 213 char ID_buf[1024]; // temporary buffer member
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| H A D | sam_header.c | 1167 sprintf(sh->ID_buf, "%.1000s.%d", name, sh->ID_cnt++); in sam_hdr_PG_ID()
1168 k = kh_get(m_s2i, sh->pg_hash, sh->ID_buf); in sam_hdr_PG_ID()
1171 return sh->ID_buf; in sam_hdr_PG_ID()
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