| /dports/biology/mapm3/mapm3-3.0_1/mapm/ |
| H A D | two_cmds.c | 56 crunch_locus_list(locus,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in two_point()
86 crunch_locus_list(loci,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in group()
302 source=IN_SEQ; in list_loci()
330 crunch_locus_list(loci,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in biglods()
363 crunch_locus_list(locus,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in near_locus()
398 crunch_locus_list(locus,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in near_chrom()
441 source=IN_SEQ; in lodtable()
465 crunch_locus_list(loci,&num_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in pairwise()
711 crunch_locus_list(loci,&num_loci,SILENTLY,ANY_CHROMS,IN_SEQ); in three_point()
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| H A D | auto_cmd.c | 205 source=IN_SEQ; in list_mapping()
236 crunch_locus_list(locus,&n_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in assign()
259 crunch_locus_list(locus,&n_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in attach()
288 crunch_locus_list(locus,&n_loci,CRUNCH_WARNINGS,ANY_CHROMS,IN_SEQ); in unassign()
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| H A D | toplevel.h | 59 #define IN_SEQ TRUE /* for in_sequence */ macro
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| H A D | sys_cmds.c | 653 source=IN_SEQ; in translate()
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| /dports/biology/abyss/abyss-2.3.1/RResolver/btllib/include/btllib/ |
| H A D | seq_reader.hpp | 324 IN_SEQ in is_fasta_buffer() enumerator
340 state = IN_SEQ; in is_fasta_buffer()
343 case IN_SEQ: in is_fasta_buffer()
365 IN_SEQ, in is_fastq_buffer() enumerator
384 state = IN_SEQ; in is_fastq_buffer()
387 case IN_SEQ: in is_fastq_buffer()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
| H A D | faidx.c | 110 enum read_state {OUT_READ, IN_NAME, IN_SEQ, SEQ_END, IN_QUAL} state; in fai_build_core() enumerator
195 state = IN_SEQ; seq_len = qual_len = char_len = line_len = 0; in fai_build_core()
200 case IN_SEQ: in fai_build_core()
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| /dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/ |
| H A D | faidx.c | 116 enum read_state {OUT_READ, IN_NAME, IN_SEQ, SEQ_END, IN_QUAL} state; in fai_build_core() enumerator
200 state = IN_SEQ; seq_len = qual_len = char_len = line_len = 0; in fai_build_core()
205 case IN_SEQ: in fai_build_core()
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| /dports/biology/py-pysam/pysam-0.18.0/htslib/ |
| H A D | faidx.c | 116 enum read_state {OUT_READ, IN_NAME, IN_SEQ, SEQ_END, IN_QUAL} state; in fai_build_core() enumerator
200 state = IN_SEQ; seq_len = qual_len = char_len = line_len = 0; in fai_build_core()
205 case IN_SEQ: in fai_build_core()
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| /dports/biology/htslib/htslib-1.14/ |
| H A D | faidx.c | 116 enum read_state {OUT_READ, IN_NAME, IN_SEQ, SEQ_END, IN_QUAL} state; in fai_build_core() enumerator
200 state = IN_SEQ; seq_len = qual_len = char_len = line_len = 0; in fai_build_core()
205 case IN_SEQ: in fai_build_core()
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| /dports/www/httrack/httrack-3.49.2/src/ |
| H A D | htslib.c | 3166 #define IN_SEQ ( (inseq = 1) ) macro
3191 /**/ if (SEQBEG && BLK(0, 00, 7F) && IN_SEQ && SEQEND) { in is_unicode_utf8()
3192 } else if (SEQBEG && BLK(0, C2, DF) && IN_SEQ && BLK(1, 80, BF) && SEQEND) { in is_unicode_utf8()
3193 } else if (SEQBEG && ELT(0, E0) && IN_SEQ && BLK(1, A0, BF) in is_unicode_utf8()
3195 } else if (SEQBEG && BLK(0, E1, EC) && IN_SEQ && BLK(1, 80, BF) in is_unicode_utf8()
3197 } else if (SEQBEG && ELT(0, ED) && IN_SEQ && BLK(1, 80, 9F) in is_unicode_utf8()
3199 } else if (SEQBEG && BLK(0, EE, EF) && IN_SEQ && BLK(1, 80, BF) in is_unicode_utf8()
3201 } else if (SEQBEG && ELT(0, F0) && IN_SEQ && BLK(1, 90, BF) in is_unicode_utf8()
3203 } else if (SEQBEG && BLK(0, F1, F3) && IN_SEQ && BLK(1, 80, BF) in is_unicode_utf8()
3205 } else if (SEQBEG && ELT(0, F4) && IN_SEQ && BLK(1, 80, 8F) in is_unicode_utf8()
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| /dports/x11-drivers/xf86-video-siliconmotion/xf86-video-siliconmotion-1.7.9/ |
| H A D | ChangeLog | 1592 Remove the IN_SEQ and OUT_SEQ macros.
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