Searched refs:IS_NEGATIVE_STRAND (Results 1 – 3 of 3) sorted by relevance
609 vote->masks[offsetX][i]= (is_reversed?IS_NEGATIVE_STRAND:0); in gehash_go_q()642 … dist0 <= indel_tolerance && is_reversed == (0!=(vote -> masks[offsetX][i]&IS_NEGATIVE_STRAND))) { in gehash_go_q()722 vote -> masks[offsetX2][datalen2]=(is_reversed?IS_NEGATIVE_STRAND:0); in gehash_go_q()906 vote -> masks[offsetX2][datalen2]=(is_reversed?IS_NEGATIVE_STRAND:0); in gehash_go_q()984 is_reversed = is_reversed?IS_NEGATIVE_STRAND:0; in gehash_go_X()
859 int minor_negative = votes -> masks[minor_i][minor_j] & IS_NEGATIVE_STRAND; in test_small_minor_votes()860 int other_negative = votes -> masks[iii][jjj] & IS_NEGATIVE_STRAND; in test_small_minor_votes()986 int is_negative = (vote -> masks[i][j] & IS_NEGATIVE_STRAND)?1:0; in test_fully_covered()1016 int is_negative = (vote -> masks[i][j] & IS_NEGATIVE_STRAND)?1:0; in test_fully_covered()1066 …align_res -> result_flags = (current_vote -> masks[vote_i][vote_j] & IS_NEGATIVE_STRAND)?(CORE_IS_… in copy_vote_to_alignment_res()1086 …(current_vote -> masks[vote_i][vote_j] & IS_NEGATIVE_STRAND)!=(current_vote -> masks[i][j] & IS_NE… in copy_vote_to_alignment_res()1377 …align_res -> result_flags = (current_vote -> masks[vote_i][vote_j] & IS_NEGATIVE_STRAND)?(CORE_IS_… in simple_copy_vote_to_result()4735 is_reversed = (max_mask & IS_NEGATIVE_STRAND)?1:0; in core_select_best_matching_halves_maxone()4748 is_partner_reversed = (vote->masks [i][j] & IS_NEGATIVE_STRAND) ? 1:0; in core_select_best_matching_halves_maxone()4827 if(max_mask & IS_NEGATIVE_STRAND) in core_select_best_matching_halves_maxone()[all …]
103 #define IS_NEGATIVE_STRAND 2048 macro