Searched refs:IsInsertion (Results 1 – 16 of 16) sorted by relevance
31 EXPECT_FALSE(v.IsInsertion()); in TEST()48 EXPECT_FALSE(v.IsInsertion()); in TEST()65 EXPECT_TRUE(v.IsInsertion()); in TEST()82 EXPECT_FALSE(v.IsInsertion()); in TEST()
18 bool IsInsertion() const { return m_indelv.empty(); } in IsInsertion() function in CLiteIndel
117 …int InDelEnd() const { return ((IsInsertion() || IsMismatch()) ? Loc()+Len() : Loc()); } // first… in InDelEnd()118 bool IsInsertion() const { return m_type == eIns; } in IsInsertion() function in CInDelInfo124 ((IsInsertion() || IsMismatch()) && Loc() <= b && a <= Loc()+Len()-1); in IntersectingWith()636 _ASSERT(!fsi_begin->IsInsertion()); // no reason to have insertion in CAlignMap()
109 bool IsInsertion() const;
156 if(m_indels[i]->IsInsertion()) { in TranscriptSeq()225 if(!indl->IsInsertion()) { in AddAlignment()238 } else if(indl->IsInsertion()) { in AddAlignment()362 … if((*prev)->IsInsertion() && (*prev)->Loc()+(*prev)->Len() == (*indl)->Loc()) // mismatch in InsertDashesInBase()
425 if(fsi->IsInsertion()) { in InsertIndelRangesForInterval()447 if (fsi->IsInsertion()) { in InsertIndelRangesForInterval()
828 } else if (indel.IsInsertion()) { in AlignModelToSeqalign()907 if(!indl->IsInsertion()) in AlignModelToSeqalign()
683 if(((i->IsInsertion() || i->IsMismatch()) && Include(fullcds,i->Loc())) || in Predict()
6372 if(indl->IsInsertion()) in FindSelenoproteinsClipProteinsToStartStop()6377 if(indl->IsInsertion()) in FindSelenoproteinsClipProteinsToStartStop()6538 if(fs.IsInsertion() && fs.Loc()+fs.Len() == lim.GetFrom()) in FsTouch()7056 len += (fs->IsInsertion() ? fs->Len() : -fs->Len()); in DropAlignmentInfo()7070 if(fs->IsInsertion()) { in DropAlignmentInfo()7365 if(ic->IsInsertion()) { in CombineCorrectionsAndIndels()7401 if(jleft->IsInsertion()) { // skip extra bases on edited in CombineCorrectionsAndIndels()7540 …if(ic != efs.end() && ic->IsInsertion() && ic->Loc() <= loc && ic->InDelEnd() > loc) // overlapp… in MapOneModelToOrigContig()7751 …e != m_editing_indels.end() && first_outside->Loc() <= (first_outside->IsInsertion() ? right : rig… in MapOneModelToEditedContig()8120 if(ig->IsInsertion()) { in SetGenomic()
213 else if(i->IsInsertion()) in CAlignModel()1594 if(indel.IsInsertion()) { in BuildGFF3Gap()
956 if(indl->IsInsertion()) in TotalFrameShift()
77 bool IsInsertion() const;
189 inline bool VcfVariant::IsInsertion() const function in PacBio::VCF::VcfVariant
1027 bool CVariation_ref::IsInsertion() const in IsInsertion() function in CVariation_ref